Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2376 ATGGAAGAAAAAGAGAATTTTGGTGCTGGGCATGCAGTGGTAGGTGATGCTAGTGCCCCAGAGAGCTTCCACGTGGCACCCAGAGTTGAGACCTTAGATTTTTCCGGTGCCTCCACGCCGGTGCCAGCAACGGGGACCGATGGGAAGAAGAAGAGAGGAAGGCCTAGGAAGTATGGACCGGATGGGAAGCCAACGGCGGCGGCAGCAGCTGGGGCGCTGTCGCCGATGCCGATATCGGCATCAATTCCGTTGACGGGAGAGTTCTCAGCCTGGAAAAGGGGTAGAGGGAAGCCTGTTGAGTCCATCAAGAAGTCATCATATAAGTTTGACTTTCAAAGTCCAGGACCAGGACCAGGTGAGGGAATCCAATACTCAGTTGGTGCCAATTTTACACCACATGTACTTACTGTAAATGCTGGCGAGGATGTTACTATGAAAATTATGTCTTTTTCTCAACAAGGATCACGAGGTATATGTGTTCTCTCTGCAAATGGCACGATTTCAAATGTTACACTTCGACAACCAACATCTTCTGGGGGTACCTTAACGTATGAGGGGCGATTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCTACTGAGAATGGAGTTACGAGAAGCAGATCTGGCGGGATGAGTGTCTCTTTAGCAGGTCCAGATGGTCGAGTAATGGGCGGAGGACTCGCTGGTTTGCTGATAGCTGCAGGCCCTGTTCAGGTTGTTGTGGGCAGTTTTCTCCCCGGTCACCAGCTCGAGCATAAATCGAAGAAGCCTAGGGTGGAACATATATCAACCATTACCCCATCACACGTTACTCCTGTTGTCTCCAACGAGGAAATACGAGTCAGTTTTGGTGGAGTGAAGCCTATTATGACACCTACTGCATTTCATGGACATGGAGAGAACATTGTTTCCTTTAACAATGCTCCAGACTCTCGGAACTCATCTGCTGACAATAAAGAACCTTTGCCTGAAAAGGAGTCTAACCCAAGCCATCCGAATGCGGAGGTCCCATGCTAA 1020 0.4922 MEEKENFGAGHAVVGDASAPESFHVAPRVETLDFSGASTPVPATGTDGKKKRGRPRKYGPDGKPTAAAAAGALSPMPISASIPLTGEFSAWKRGRGKPVESIKKSSYKFDFQSPGPGPGEGIQYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRGICVLSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHQLEHKSKKPRVEHISTITPSHVTPVVSNEEIRVSFGGVKPIMTPTAFHGHGENIVSFNNAPDSRNSSADNKEPLPEKESNPSHPNAEVPC* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2376 339 MobiDBLite consensus disorder prediction 301 339 - -
Amo19g2376 339 ProSiteProfiles PPC domain profile profile. 127 269 IPR005175 -
Amo19g2376 339 MobiDBLite consensus disorder prediction 30 68 - -
Amo19g2376 339 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g2376 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 13 327 - -
Amo19g2376 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 248 - -
Amo19g2376 339 CDD DUF296 131 245 IPR005175 -
Amo19g2376 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Amo19g2376 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 327 IPR039605 GO:0003680
Amo19g2376 339 Gene3D - 132 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2376 Amo-Chr19 109264679 109271150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2376 43 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 64.889 1.86e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2376 - - gmx:100789179 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g3180 05 93328801 93333064 Amo19g2376 19 109264679 109271150 PCT
Amo19g2376 19 109264679 109271150 Amo05g3180 05 93328801 93333064 PCT