Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2349 ACGAACTTCCCCGAATCTGCGGTTTTTTCCACAAGCAAAGAATCAAGTCAGCAAAAGCAGGATTTGCCTAAAAATAAGTTCTTTCTTCTCCCATTATTTGATCTTTCTTCTCTTCTCCTTCTTCCACCAGTTCTCCAACAGCATCATCGAGATTTGAGGCACATGGATGAGTCAAATAAGCATAAGGCCATCAGAGCCAAAGAGATTTCTGAGAAAATGTTTGCTGCAGGTGATGTTTATACTGCAATGAGGTTCGCTTGTATGGCTCGAAATTTGTTTCCTGGTCTTGAGGGTATTAAGCAGATGATAAAAATATTTGGTATATACCTGGCTGCTAAGATCAAAATAAATGGTGAAATTGATTGGTACACTATGCTTGGTGTAGGTGCGCAAGACGATGTTGCCATAATGAGGGAATCGTACATGAGTTTAGCTTCCCTGATTCACTCTGAGGAGAACAAGTTTGTTGGCGCAGATGGGGCCTTTGAACTTGTTTCGCAAGCATGGAGTGTGCTGTCGGATAAGGCTAAGAGGGCAATGTTCGATGAGAAGATTAATGCCCCAGCATTCGATGAGGAGGTGAAGGTGGAAACATGTAAACTTGCAACTGAGTGTGAATATATACCATCACAAGAGGGGGATAATTGTGATCACAATGTTACTGAGGCTGCCTCTTCAAATGCAAAGATTCAGAAGGACAATTCACCTGCATCAAGATCAAGTACATTTTGGACTATGTGCCGTAGGTGCAAGCTTGTATTCCTGTACCCTAGAGTTAAAGTTAACTGTAGACTTTTGTGTTTTGTTTGCAACAAAGAATTTATGGCAGTTGAACTAGATAGACGGAGGGTTTTATCAGCAAGGAGGCGCTCCAGGGGTTTGCACACTGTCAATCCACAGGCACATGATGTAAGCAACTTTCATGGCAGTACATTACTGAGAAAAACTTGTCAGGGTTCCTCTGCAACTCAAGAAAAAGATGTTCAACAGATGTATCAGAAAGTAAAGCGAAAGCGCAATGAGGAGCAAGTAACAGAGAGGGAAAATGCCTCCCAAGAGGAGCACCCTGTTGCTAAAAGAAGTTACTTTAATCCTTCCAAGATAAGAAGTGCCTTGGAGGATATGAGCTTGACCGGCTCTGATGAGCGAAACACAAAGGAGCCAGATTTCAAATATAGCGGGACAAGCCAACCTAAAGAGAGCGGCATTGCAAAAGGCATCTACCAGGTGGAGCTTCGTAACCATTTTATGGACGTTGCTGTAAATGCGCTTAGTACAAAACTAGCTGCTCTTAATCCGGATACTAATGATAGCCAGAAAGCAAATGAGACGGGGGAAACATTTTTGAGAGAATCTGAAAGTTATGATCAAGACAATTGTGAGAAGCCAGAAGAAAGGACAAGCGGAGTCCAAGCAACCATGCCATCTGCAGGCTCTAATACTATGACTGACATGCTAACAAAATCTTTGGGGAAGATGTCAATAGAGTTTCCAACTTCCAAATAA 1506 0.423 TNFPESAVFSTSKESSQQKQDLPKNKFFLLPLFDLSSLLLLPPVLQQHHRDLRHMDESNKHKAIRAKEISEKMFAAGDVYTAMRFACMARNLFPGLEGIKQMIKIFGIYLAAKIKINGEIDWYTMLGVGAQDDVAIMRESYMSLASLIHSEENKFVGADGAFELVSQAWSVLSDKAKRAMFDEKINAPAFDEEVKVETCKLATECEYIPSQEGDNCDHNVTEAASSNAKIQKDNSPASRSSTFWTMCRRCKLVFLYPRVKVNCRLLCFVCNKEFMAVELDRRRVLSARRRSRGLHTVNPQAHDVSNFHGSTLLRKTCQGSSATQEKDVQQMYQKVKRKRNEEQVTERENASQEEHPVAKRSYFNPSKIRSALEDMSLTGSDERNTKEPDFKYSGTSQPKESGIAKGIYQVELRNHFMDVAVNALSTKLAALNPDTNDSQKANETGETFLRESESYDQDNCEKPEERTSGVQATMPSAGSNTMTDMLTKSLGKMSIEFPTSK* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2349 501 MobiDBLite consensus disorder prediction 374 400 - -
Amo19g2349 501 MobiDBLite consensus disorder prediction 337 358 - -
Amo19g2349 501 MobiDBLite consensus disorder prediction 451 465 - -
Amo19g2349 501 ProSiteProfiles dnaJ domain profile. 121 185 IPR001623 -
Amo19g2349 501 MobiDBLite consensus disorder prediction 337 355 - -
Amo19g2349 501 Gene3D DnaJ domain 119 187 IPR036869 -
Amo19g2349 501 SUPERFAMILY Chaperone J-domain 110 185 IPR036869 -
Amo19g2349 501 MobiDBLite consensus disorder prediction 451 501 - -
Amo19g2349 501 ProSitePatterns Nt-dnaJ domain signature. 162 181 IPR018253 -
Amo19g2349 501 Pfam DnaJ domain 121 182 IPR001623 -
Amo19g2349 501 PANTHER BNAC03G44070D PROTEIN 57 460 - -
Amo19g2349 501 Coils Coil 328 348 - -
Amo19g2349 501 CDD DnaJ 121 174 IPR001623 -
Amo19g2349 501 PANTHER HEAT SHOCK PROTEIN-LIKE 57 460 - -
Amo19g2349 501 MobiDBLite consensus disorder prediction 469 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2349 Amo-Chr19 107625278 107627088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2349 56 279 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 26.522 4.25e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2349 - - aip:107619213 832.787