Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2321 ATGGTCGTTAGTGGAGGGAAGCCTCTGAAGCGCATGAAGAGGAGAGTCACGGCTGATTTCTACGACTTTCTCTCGTTCCCCTCCCCATCACTCGCCGCCCACGAGGGCTTCGCCGGCGCTCCCTTCAGATCTGCCGTCCGATCCTTCCTTACGAAGCACGCGCTTCTCCCGCCGCCTTCCGCGCTCTTCCCTCATCTGCTGACATGGCAGATCCTCTTCCGTGTTGGCGACGTCGCCGGCGAAGGGGGTGCGGAGTCCGGTGGTGCGGCGGCGGTGTGCCTCGACATCGTGGAGGAGGATGTTGCCAGATCCAGATCTGTGTACTGCGACCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCTGATGGAAGCTCCATTGGTGGGTACCATAAACCATGTATGTGCTGTGGAGATATCCTGCACTTGTCAGAATCCAAGTGTAAGTCATGCAACCATGCGACTACCACTGATGATGTGGAGGACTGGGTGTACCACCAGTTAGAGAATACGACACATCTCTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTACGCGTTAATGGCAGAGAAGGTGGATCTAGATATCTTTCTGGTTGCCATATCATGGACTTCTGGGATCGCCTATGCAAGACACTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGTTAGAGTACCGCCTACTCCATACAATCATGAAGGGACATCCCTGGTATGGTGACTGGGGTTATCAATTCGGTTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGACTGCGGTTGACAGCCTATCCAATTTGCCCTTGTCTACCTACCTGTGCCAAGGACAAAATTCTTCCCTCTCTCGTGTCCAGGGCATGATTTCATACTTTCAATCTTTGTCAGACCATGAGCTTGTAAATGTAAGGGACCTCTTTTGTTTTTTGATGGGTTTGATTCATGATGCTCGCGACACTGCAACAAAGGTTGATGACGTGGCCTGCAAGAAGCGCCGTGTTAACGATTCTGGACTGTTATGGTCTTGGGAGAAGAAGGATATTGAACGTGTGGAGGAAGCCATGCTCAAGGTGTTGCGTGCAGTGTCTGGGTCCAATTGGGTGAGCGCTCGAGCTCTTAGGGGTGCAGTCTGCAAGTTGGCCTCTACAGAGCTTCTTGATTATTGCCTTGGAGGACTGGGAGGAAAAGTGGTCTATGGTGGAATGGTTGTTAATGCCCGATGCAACCCTCAAACTGGAACTTTTGAATACAGACTTGAGGCTGCAAATGGCTCCTCCTTTGGAATTATTGCAAACAACTCTTCTGGTTCAAAGTATCCATCCAAAGAGAATCTCCTACAGTGTTTGAGATATTTATATGAGGCTTTGCTTCACCCTCAGATGATGGTAAATTATGCCCCCGAAGGGACAAGGGTTCTTGCAATGAGTTCAGCTCAGAAGCTTCTTGATTGCAAGCAGTTTGTGAAAGACTACACTCCTGGGATGCCCCCAATGTCAGACCTACAGAAAATACGAATATCATGTCGGGTTGAACTGGTGGATGAAGCTGAAGATCCTGCAGCCAAAACTCCACCGGAACTGATTGTGCTGCCTGCAGATGCCACTGTCTCTGATGTTAAGATCGAAGCAGCAAATGCTTTCCAAGATGTATATCTGATGTTCAGAAGATTTCAAGTTGATGAGCTACTTGGCTATAGCGGTGTTGAAGATCCCACCCAGGTCAAGCACTTATTAGGATCAGAAGAACTCGCCACGGTTTGTGTCCGTGGAAGATGCATGGCGAAGAATGGGCTGAGCAAGTTCCGAATGGAACGAGGACTCGAGAGGTGGACCGTAGATTGCAATTGTGGGGCGAAGGATGATGATGGGGAGAGAATGCTAGCTTGTGACGTATGTGGAGTTTGGCGGCATACTAGGTGTTCTAACATCCGCGACATTGATCCCGTTCCAGCGCGATTCGTTTGCCCAAAATGTCAAAACTCTGACCAAAATCCCAAGTCTCTTGGGCACTGCAAAGAGGTGACAGTGACCAACGTTAGTGCTAGTGGTAGCTGCTTTGGAAATGGCTTGCCAATGCCTTCTGATGTTCGTTAA 2151 0.4937 MVVSGGKPLKRMKRRVTADFYDFLSFPSPSLAAHEGFAGAPFRSAVRSFLTKHALLPPPSALFPHLLTWQILFRVGDVAGEGGAESGGAAAVCLDIVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHATTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRYLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHTIMKGHPWYGDWGYQFGSGSYCLTHEAYKTAVDSLSNLPLSTYLCQGQNSSLSRVQGMISYFQSLSDHELVNVRDLFCFLMGLIHDARDTATKVDDVACKKRRVNDSGLLWSWEKKDIERVEEAMLKVLRAVSGSNWVSARALRGAVCKLASTELLDYCLGGLGGKVVYGGMVVNARCNPQTGTFEYRLEAANGSSFGIIANNSSGSKYPSKENLLQCLRYLYEALLHPQMMVNYAPEGTRVLAMSSAQKLLDCKQFVKDYTPGMPPMSDLQKIRISCRVELVDEAEDPAAKTPPELIVLPADATVSDVKIEAANAFQDVYLMFRRFQVDELLGYSGVEDPTQVKHLLGSEELATVCVRGRCMAKNGLSKFRMERGLERWTVDCNCGAKDDDGERMLACDVCGVWRHTRCSNIRDIDPVPARFVCPKCQNSDQNPKSLGHCKEVTVTNVSASGSCFGNGLPMPSDVR* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2321 716 Pfam PHD-finger 633 679 IPR019787 -
Amo19g2321 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 684 IPR013083 -
Amo19g2321 716 CDD PHD_MMD1_like 632 677 - -
Amo19g2321 716 PANTHER OS01G0877500 PROTEIN 1 686 - -
Amo19g2321 716 SUPERFAMILY FYVE/PHD zinc finger 621 681 IPR011011 -
Amo19g2321 716 SMART PHD_3 632 678 IPR001965 -
Amo19g2321 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 686 - -
Amo19g2321 716 ProSitePatterns Uncharacterized protein family UPF0054 signature. 187 197 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2321 Amo-Chr19 104682377 104687904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2321 92 677 PHD Transcription Factor Family AT5G22260 31.161 2.88e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo19g2321 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2321 - - gmx:100818189 1151.35