Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2312 ATGGCAACTAGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCGAAACTTACCAATGCCTACTGTTTGGTTGCCATTGGGGGTTCTGAAAATTTCTACAGTGCCTTTGAGGCTGAGTTAGCAGATGTTATCCCTGTTGTCAAAACCTCCATTGGTGGAACTCGTATCATTGGTCGTCTTTGTGTTGGAAACAAGAATGGTCTTCTCTTGCCGCATACCACAACAGACCAAGAACTTCAACATTTGAGGAATAGTTTACCCGATCAAGTTGTTGTTCAACGCGTAGATGAAAGATTGTCGGCTCTGGGAAATTGTATAGCATGTAATGACCATGTTGCCCTCGCACACACCGATCTCGACAAGGAAACTGAGGAGTTAATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAAACTATCGCGGGCAACATTCTTGTTGGCAGTTACTGCGCCTTATCAAACAGGGGTGGTTTGGTTCACCCACATACTTCAATTGAAGACTTGGATGAGCTTTCGACCCTTCTTCAGGTGCCCTTGGTGGCTGGGACTGTCAACCGTGGCAGTGAAGTAATAGCAGCCGGCATGACAGTAAATGACTGGACAGCATTTTGCGGGTCAGATACGACGGCAACGGAACTGTCCGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCACAGCCCAATGCAATTGCGAATGAGATGAGGAAATCTCTCATTGATAGTTATGTATGA 738 0.4512 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRVDERLSALGNCIACNDHVALAHTDLDKETEELIADVLGVEVFRQTIAGNILVGSYCALSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIANEMRKSLIDSYV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2312 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Amo19g2312 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Amo19g2312 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Amo19g2312 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Amo19g2312 245 SUPERFAMILY Pentein 1 224 - -
Amo19g2312 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Amo19g2312 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Amo19g2312 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Amo19g2312 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Amo19g2312 245 Gene3D - 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2312 Amo-Chr19 104255584 104260502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2312 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 92.245 6.54e-175 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2312 K03264 - ming:122066887 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2312 19 104255584 104260502 Amo09g1861 09 77175214 77179352 hybridization
Amo05g3292 05 95143000 95146053 Amo19g2312 19 104255584 104260502 PCT
Amo19g2312 19 104255584 104260502 Amo05g3292 05 95143000 95146053 PCT