Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2285 ATGAATGAGAACAAGCTTGATTTTCATTCTGAATATGGCAACCGTTCTTCTTGTCAATATTTTGGTATTAGACAACAACCTTGGAACATGGGACCATGCAATAACCAACCCCTCGGCGCGACTTGCGTCAGCGTTGGAGTTGGCAGAGGAAGAGGAGGAGGAGGAGGAGAACAAGAAGTAGTACTACCATACTCGGCTCAAGCCAAACCATCTAGCACCATCATAAGCCGATTCGAGTCGCCGGCTTCGGCCTTTTACGCGACGGAAATCTTCATGGGGTTCCCACAATATGATTCCCATCAAGTTGGTAATCCATCCAATTTGATGCCTCATCAACTCTCCATCAAGAACATTAATAATGATATGGAGTTCCCTCTCTATCAATCTTCAAAGGAAAGCCTCTTCTTTGATTCATCAGTTAATGACCAAAATAGCCCCAACAACTTTGAGTTGCCAAACACCTTGCAAGCAATAAAATCTCAATTGAATGGTGATCAATGTAATGGATCACCTGAAAAATCTAATAAAATTCCATGTGGGAATTTTCCTGCCAGCAATTTCCTTCCTATTGAACAACATAAGTTGTTCAATGATGATGCTGCCCCAGTCACTAGGAGCATATCAATTCCTAAAGCAAATCAAGAATCTACGGTTGCTTGTGGCTCATTCAATTCCCCTGTTCAACAGCTGAGTTTCTCTTCTCCTCAAGAGAAGCTTTCTCCGACAATTTCAGCCGGAAACCTTGTCGGTAATGGACCGATAGCATCGAGTAAGACGCGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAATGTGTCAATAGACTAGGAGGCGCAGAGAAGGCGACGCCGAAAGCGATATTAAGGCTGATGGATTCAGATGGATTGACAATCTTCCATGTTAAGAGTCATTTGCAGAAATACAGAATTGCAAAGTATATGCCAGAATCAACTCAGGGTTCATATGCTTTGCCTAAAAAGTACTTCTTCCCTTTTTCAGGGAAATCTGAGAAAAGAACCAGTGCAGAGAATGTGCATCTTGATGTCAAAGCTGGCTTGCAGATTAAAGAGGCACTTCAGCTGCAATTGGATGTGCAGAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAATTACAGTTGCAAATTGAAGAACAAGGAAAGCAGCTGAAGATGATGTTTGACCGRCAGCAGAAGTCAAATAATAGTGAAAGAAGTTCTAAAGATAATAATAATGATGATAATGAGGTTACAATTTTAGAAGGGACTGGAATTTCCCACTTCCCTTCAAAGATAAGTTAG 1308 0.4144 MNENKLDFHSEYGNRSSCQYFGIRQQPWNMGPCNNQPLGATCVSVGVGRGRGGGGGEQEVVLPYSAQAKPSSTIISRFESPASAFYATEIFMGFPQYDSHQVGNPSNLMPHQLSIKNINNDMEFPLYQSSKESLFFDSSVNDQNSPNNFELPNTLQAIKSQLNGDQCNGSPEKSNKIPCGNFPASNFLPIEQHKLFNDDAAPVTRSISIPKANQESTVACGSFNSPVQQLSFSSPQEKLSPTISAGNLVGNGPIASSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPESTQGSYALPKKYFFPFSGKSEKRTSAENVHLDVKAGLQIKEALQLQLDVQRRLHEQLEIQRKLQLQIEEQGKQLKMMFDRQQKSNNSERSSKDNNNDDNEVTILEGTGISHFPSKIS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2285 435 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Amo19g2285 435 Pfam MYB-CC type transfactor, LHEQLE motif 355 402 IPR025756 -
Amo19g2285 435 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Amo19g2285 435 MobiDBLite consensus disorder prediction 398 435 - -
Amo19g2285 435 MobiDBLite consensus disorder prediction 403 417 - -
Amo19g2285 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 315 IPR017930 -
Amo19g2285 435 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 50 419 IPR044848 GO:0003700
Amo19g2285 435 Gene3D - 257 316 - -
Amo19g2285 435 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 50 419 - -
Amo19g2285 435 Coils Coil 358 378 - -
Amo19g2285 435 Pfam Myb-like DNA-binding domain 262 311 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2285 Amo-Chr19 102514169 102517658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2285 238 399 G2-like Transcription Factor Family AT4G28610 53.988 7.13e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo19g2285 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2285 - - aip:107619706 862.448