Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2283 ATGAAAGGAATATCCTATCGGGGTAATCATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATAGAAGCAGGTCGGCGGGCAATGTCACGAAATGTCCGCCGAGACAAACCAGTTACAGTAAGACCAACCGAAACGCGTATGGGTTCGGGAAAGGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCCGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCAGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAATATGATGATAATGCCGCGGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCGAGGACACCATCGCCGACATAA 567 0.4356 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRDKPVTVRPTETRMGSGKGSPEYWVAVVKPADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPRTPSPT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2283 188 Pfam Ribosomal protein L14p/L23e 70 183 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 TIGRFAM rplN_bact: ribosomal protein uL14 71 183 IPR005745 GO:0003735|GO:0006412|GO:0015934
Amo19g2283 188 Hamap 50S ribosomal protein L14 [rplN]. 50 185 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 Gene3D Ribosomal protein L14 72 184 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 Gene3D Ribosomal protein L10e/L16 1 71 IPR036920 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 72 183 - -
Amo19g2283 188 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 72 183 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 Pfam Ribosomal protein L16p/L10e 2 73 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo19g2283 188 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo19g2283 188 ProSitePatterns Ribosomal protein L14 signature. 123 149 IPR019972 -
Amo19g2283 188 SUPERFAMILY Ribosomal protein L16p/L10e 1 73 IPR036920 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 SUPERFAMILY Ribosomal protein L14 68 183 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 TIGRFAM rplP_bact: ribosomal protein uL16 1 73 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo19g2283 188 ProSitePatterns Ribosomal protein L16 signature 2. 56 67 IPR020798 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 CDD Ribosomal_L16_L10e 7 73 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo19g2283 188 SMART Ribosomal_L14_2 69 185 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2283 Amo-Chr19 102235042 102236257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2283 69 181 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.752 8.38e-16 68.9