Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2282 ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTAAAAAAACCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTACGGAAAAAGAAATAATAATAACTTGGTCCAGAACATCTACCATTATCCCCACAATGATTGGCCATACCATTGCTATCCATAATGGAAAAGAACATTTACCTATTTATATAACAGATCGTATGGTAGGCCATAAATTGGGCGAATTTTCACCTACTCTAAACTTCCGAGGACATGCGAAAAATGATAATAGGTCTCGTCGTTAA 549 0.4153 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKTLGRAGSKCWLGKRPKKTATPWGYPALGRRSRKRNKYSDNLILRRRTEKEIIITWSRTSTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2282 182 PRINTS Ribosomal protein S19 family signature 155 170 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 PRINTS Ribosomal protein S19 family signature 123 142 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 PRINTS Ribosomal protein S19 family signature 143 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 SMART Ribosomal_L2_C_2 1 94 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 SUPERFAMILY Ribosomal protein S19 98 174 IPR023575 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 ProSitePatterns Ribosomal protein S19 signature. 143 167 IPR020934 GO:0003723
Amo19g2282 182 TIGRFAM rpsS_bact: ribosomal protein uS19 99 182 IPR005732 GO:0003735|GO:0006412|GO:0015935
Amo19g2282 182 Hamap 30S ribosomal protein S19 [rpsS]. 97 179 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 PANTHER - 1 85 - -
Amo19g2282 182 Pfam Ribosomal protein S19 114 173 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 SUPERFAMILY Translation proteins SH3-like domain 1 114 IPR008991 -
Amo19g2282 182 Gene3D - 1 63 IPR014722 -
Amo19g2282 182 PANTHER RIBOSOMAL PROTEIN L2 1 85 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 Pfam Ribosomal Proteins L2, C-terminal domain 1 85 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo19g2282 182 Gene3D 30s Ribosomal Protein S19; Chain A 97 182 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2282 Amo-Chr19 102231860 102232919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2282 1 79 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 37.778 5.68e-10 55.1