Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2273 ATGCCAGCAAAGCCAATCGTTTCTCTTATGCTAGACTTAGTAGCAGATATGATGAAGACAGAGTTGACTAGAGAAAGTGGTTATTGGTTTTTACCCACAACTTTTGCGGTCTTTATCCCTGTATCTGAAACTACTGACGAAGGTCATGAACAATGGTACCTCGTAGTGATTGATCGTGTTAAAAGACAAATCATTTTGCTAGACCCATTTTCCATTGAGAAACAGTTCAAGCAAAAGAGGATAGCCTTGAAATTAGCCATTTATTTGGACGAGGTATTGGAAGATCGTTCATTCTATGACTTTGAGACCACTCTAAATCTGATTTCTTCACAATTTGAATTTGAAGAGCCAGAAGGCCTTCTGACCCTCGAAGTGGATGATGGGGTTCACATGAAGATTGCAGTCTCACTCGTGTTAAAGAATCATAATATGATCAGCTATAGGGCAGAGGCTCTTTCTGATGATAAGTCTGAGCAATCTTCTAAGACTAAATCTGTGCTACCTGCTAAAGCTATGTCAGCACCAGATTCTGCGGACAAGGCTGAGCCACCACTTGAGGACAAAAGTGAGAATCAAGAGGCGATTCCTGAGGGTATTCCACAGCAAGATATTCAAAGTAGTGAAAATACTCTTCAGTCAGTCATATTAGAGCTTGATGTAAATAGAACTGATCGTGAGGAAGCTTCTAACCTGATGGAGGAAGCTAATGAATTTCCTCAGAGCAATAATGGTACAGAGGATGATGTGAATGTTTTTACAAATAATGCCAATGTTGCTGAAACAACAGCAGAGGTGAAGCCTGAAGATGGTGAAGTGGCTAATGGTAAAAGTTGCAACCATGCTAAACCCATACCATCCGGGCATAATGAACCTTTTATGCTGCAAGCTGTTCCAGCCGATACAAACGTTGAAATCAAGAATATATTAGAAGTTGAGAATAAGACTGATGAAAATCAAGCTACTGCAACTGCAGACAATGGGAATGAAAACTCAAGTCACATGCTTTTCTTGGACGCTGACCATTGTTATGATGGGAATGAGTCAGAGACGGAGGAAGAGCAATCAGCATTCATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAACTTTTATGGAGAAGGACTTAATTACCTTAAGTTGTGGAGAGCTGTAACAAGATTGGGTGGTTATGACAAGGTCTTGAATATAGGCAACAAGGAGAAGGATGATAGTGGAATTGGAGATAAAATAAATAGATCAGAAGATGAGGTGTTTTCAGATGCAATTGCAGACTTTTCAGATAGTCAAGGAGTTAAGGAATCTCAGACTTTACTTGAAAAGGAAGAAGAAAATACTAATTCTAATATCCTTCCTACAAGTGTTGATAGAACTGAAGTATCGCCATCACAAGGTGAGTATGAAGATCTTGAAAAGGTGCTATCTCGAGATCTTTCAGGCCTAGATTTGTCTGACTAA 1476 0.397 MPAKPIVSLMLDLVADMMKTELTRESGYWFLPTTFAVFIPVSETTDEGHEQWYLVVIDRVKRQIILLDPFSIEKQFKQKRIALKLAIYLDEVLEDRSFYDFETTLNLISSQFEFEEPEGLLTLEVDDGVHMKIAVSLVLKNHNMISYRAEALSDDKSEQSSKTKSVLPAKAMSAPDSADKAEPPLEDKSENQEAIPEGIPQQDIQSSENTLQSVILELDVNRTDREEASNLMEEANEFPQSNNGTEDDVNVFTNNANVAETTAEVKPEDGEVANGKSCNHAKPIPSGHNEPFMLQAVPADTNVEIKNILEVENKTDENQATATADNGNENSSHMLFLDADHCYDGNESETEEEQSAFMKELENFFRERSMEFKPPNFYGEGLNYLKLWRAVTRLGGYDKVLNIGNKEKDDSGIGDKINRSEDEVFSDAIADFSDSQGVKESQTLLEKEEENTNSNILPTSVDRTEVSPSQGEYEDLEKVLSRDLSGLDLSD* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2273 491 CDD ARID 353 402 - -
Amo19g2273 491 Gene3D - 339 443 IPR036431 GO:0003677
Amo19g2273 491 Pfam ARID/BRIGHT DNA binding domain 354 402 IPR001606 GO:0003677
Amo19g2273 491 SUPERFAMILY ARID-like 345 402 IPR036431 GO:0003677
Amo19g2273 491 ProSiteProfiles ARID domain profile. 351 437 IPR001606 GO:0003677
Amo19g2273 491 SMART bright_3 352 453 IPR001606 GO:0003677
Amo19g2273 491 MobiDBLite consensus disorder prediction 436 477 - -
Amo19g2273 491 MobiDBLite consensus disorder prediction 151 193 - -
Amo19g2273 491 MobiDBLite consensus disorder prediction 448 467 - -
Amo19g2273 491 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 166 402 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2273 Amo-Chr19 100967113 100969896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2273 312 400 ARID Transcription Factor Family AT1G20910 42.697 1.44e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Amo19g2273 ARID 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2273 - - aip:110268875 464.922