Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2197 ATGTATGGAGCAGCGGTTTTAGATGCATATGAGCAAATAAAGGTACGCATGGAACCTGTTGCTTCATGGAACAACTTCAACTCATTTGCTGAGATTCTTGGATGGCAACAAGTTGCTGAAAAAATTGGAATGCAACATTGTGCTGCATCAGGCCAATGGCTAAATGAGAGAATTGCTCTCTCAAGATATGCCCATGTACCACTTGGAAATTTTGAACTTGACTGGCTTATATTTACAGCAGATACCTTCTTCTCAAGAGCTTTGCGTGATAGTCAACAGGTTCTGATTGTTCATGTTGCTGCACAAAATCAGCAACGCATTCCATTTGGAGTTGGTATGGCATCAGATCCCATGGCTTTGCGTAGAGGAGCAAAACAGCTTGCTATGGAAGATGTTTGCTATTATCAATGGCCTCTGCCTGGGCTGGATCAGTTTGGGCTATTTGGTATCTGCGATGGGGCTGCTAAATCCGCAAGCAAATTAAAGCCACCATCAGGGTCTGCTGTGCCTATTGCAGAGTACATTCCAGGTCAGGAATCAGGAGTTAGGGTCAAATTGATGTCCTATATCCTATATGTTAGCATGAGATTTTTTTGGTAA 600 0.4283 MYGAAVLDAYEQIKVRMEPVASWNNFNSFAEILGWQQVAEKIGMQHCAASGQWLNERIALSRYAHVPLGNFELDWLIFTADTFFSRALRDSQQVLIVHVAAQNQQRIPFGVGMASDPMALRRGAKQLAMEDVCYYQWPLPGLDQFGLFGICDGAAKSASKLKPPSGSAVPIAEYIPGQESGVRVKLMSYILYVSMRFFW* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2197 199 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 23 109 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Amo19g2197 199 Pfam Domain of unknown function (DUF1744) 27 95 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2197 Amo-Chr19 94836859 94840790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2197 3 97 Core DNA Replication Machinery Family AT1G08260 50.526 2.93e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2197 K02324 - aip:107619117 183.726