Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2196 ATGACGGGATTAGAAGTGGTTGTTATGGCAAGGGGAGGTGGTGGCACGGTGGCGAGCGTGACTGCTCCGTTGTTAATGGTGAGCGGGTTCTCGAAGGGACCACAGGGCGAGCTTGCGATGGTGGTTTCAAGAACACCAAAGTATCTAGTCGAAAACAAGGATTTTCAGCACATTTTGTGTGTTCTAAACATAAACATAGATGGAAAGCAGAAGATTATGTTTGCTATAACCTTCATCAAAGGTATCGTAAGGCAATTCACCAACATCTGTTGCAAGAAGGTCGATATCCGCATGAACAAGAGTACGTTGCCCTCCTCCTTTTATGTCGTGTATATGATATTTATCTTACTAAGGGTTGAAATACAAGGATGGCAAGTACTCTCAGCCTCTCAGGTAGTGACCAACGTCCTTGACATGAAGCTCAGGGATGACTACTTGGAGAGACTCAAGAAAATCAGGTCTCACTCATAA 471 0.4459 MTGLEVVVMARGGGGTVASVTAPLLMVSGFSKGPQGELAMVVSRTPKYLVENKDFQHILCVLNINIDGKQKIMFAITFIKGIVRQFTNICCKKVDIRMNKSTLPSSFYVVYMIFILLRVEIQGWQVLSASQVVTNVLDMKLRDDYLERLKKIRSHS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2196 156 SUPERFAMILY S13-like H2TH domain 60 154 IPR010979 GO:0003676
Amo19g2196 156 Gene3D - 48 103 - -
Amo19g2196 156 PANTHER BNAC06G07900D PROTEIN 130 155 - -
Amo19g2196 156 PANTHER BNAC06G07900D PROTEIN 31 101 - -
Amo19g2196 156 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 31 101 - -
Amo19g2196 156 ProSiteProfiles Ribosomal protein S13 family profile. 61 156 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo19g2196 156 Pfam Ribosomal protein S13/S18 61 155 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo19g2196 156 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 130 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2196 Amo-Chr19 94832912 94833710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2196 49 155 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 51.261 3.15e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2196 K02964 - gmx:100306474 108.612