Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2180 ATGATGATGAGGATGATAGACCAACACAACTTGGTACTTTGCGTAGCTTTATCGTCACTTTGCATTGCTTTTGCTCCTTGGATCTCTATTGAAGCTGCCCCTCCATCCTCTCTTATCACACAACTCCCTGGCTTCAAAACTTCTTTCCCATCCAAGCATTATTCCGGATATATAACTGTTGATGGAAATGTTGAGAGTGGGAAGAACCTGTTCTACTACTTTGTAAGTTCCGAAAGAAATCCAGCAAAGGATCCAGTTGTTCTATGGTTGAATGGTGGACCAGGTTGTTCTAGCTTCGATGGCTTCGTTTATGAGCATGGGCCATTCAACTTTGAGGCTTCAAGAACGGAAGGGAATCTTCCCACCTTGCATATCAATCCATACAGCTGGTCTAAGGTTTCCAGTATTATTTATTTGGATTCACCTGCTGGGGTGGGTCTCTCTTACTCCAAGAATTCCAGCAAATACAACACTGGGGACTTACAAACTGCATCTGATACTCATGCTTTTCTCCTAAAGTGGTTTGAGGAATTCCCTGAATTTCTTGAAAATCCATTTTATATTTCCGGGGAGTCTTATGCTGGAATATATGTTCCCACGTTGGCTTATGAAGTGGTCAAAGGAATCAAGGGTGGTATTAAGCCCGTGATCAATTTCAAGGGTTATATGATTGGAAATGGTGTCACGGACAACACCTTCGATGGCAACGCTTTTATCCCATTTGTGCATGGGATGGGCCTCATATCCGACAGTATCTACGAGGAAGTAAAAGCTTATTGCAAAGGAAATGATGACGAAAGTGATATGTGCTCAAAGAGTTACCTAAAAGTTGACAGGGCCATTGAAGATCTTAATGTGTACAACATACTAGAGCCATGCTATCATAACTCAAATACAGGTTCAACAGGGAATGTGAGTTTGCCAACAAGTTTCAAGGAATTAGGGAAAAGTGAGAAGCCACACCCACACCCTGTGAGGAAGAGGATGTTTGGTAGGGCATGGCCCCTTAAAGGCACAGTCAAAGAAGGCCCAGTTACATTGTGGCCCCAGTTGGCTGAAGATGGCCACATTCCTTGTGTCAGTGATGAGGTAGCAACTTCATGGCTGAATAACCAAGAAGTCAGACAGGCCATCCATGCTAAACCGAAAAGTGTTGCGGGTCCGTGGGAATTATGCACTAGAAGGATATATTACAATCACGATGCTGGAAGCATGATTCCATACCACAAGAAACTAACCATCATGGGCTATCGAGCACTAATTTTCAGTGGTGACCATGATATGTGTGTGCCATTTACTGGAACTGAGGCATGGACACGATCTCTTGGATATAAGATCATAGATGAATGGAGACCATGGACCTCTAATGACCAAGTTGCTGGATACTTGCAAGCATACAATCACAACCTCATCTTCCTCACTGTCAAGGTACCTCATAAAACACACCACACTAACATTAATTTTCAACTTAAATATCATATCTTAAGTAGTAAAAGCTCTTTTGGCGCCTCACCATTTGTCCAAAGACAAATCACCATAGTTATCATTGTGACTAATTTGGGATCGGTCCTAACTGACATGGAACAGGGAGCTGGACACACAGTCCCTGAATACAAGCCACGCGAGGCACTGGATTTTTACAGCAGATGGTTGGAAGGGAAATCCATATAA 1671 0.4291 MMMRMIDQHNLVLCVALSSLCIAFAPWISIEAAPPSSLITQLPGFKTSFPSKHYSGYITVDGNVESGKNLFYYFVSSERNPAKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEASRTEGNLPTLHINPYSWSKVSSIIYLDSPAGVGLSYSKNSSKYNTGDLQTASDTHAFLLKWFEEFPEFLENPFYISGESYAGIYVPTLAYEVVKGIKGGIKPVINFKGYMIGNGVTDNTFDGNAFIPFVHGMGLISDSIYEEVKAYCKGNDDESDMCSKSYLKVDRAIEDLNVYNILEPCYHNSNTGSTGNVSLPTSFKELGKSEKPHPHPVRKRMFGRAWPLKGTVKEGPVTLWPQLAEDGHIPCVSDEVATSWLNNQEVRQAIHAKPKSVAGPWELCTRRIYYNHDAGSMIPYHKKLTIMGYRALIFSGDHDMCVPFTGTEAWTRSLGYKIIDEWRPWTSNDQVAGYLQAYNHNLIFLTVKVPHKTHHTNINFQLKYHILSSKSSFGASPFVQRQITIVIIVTNLGSVLTDMEQGAGHTVPEYKPREALDFYSRWLEGKSI* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2180 556 Pfam Serine carboxypeptidase 43 476 IPR001563 GO:0004185|GO:0006508
Amo19g2180 556 Gene3D - 405 553 - -
Amo19g2180 556 Gene3D alpha/beta hydrolase 32 313 IPR029058 -
Amo19g2180 556 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
Amo19g2180 556 PANTHER CARBOXYPEPTIDASE 529 555 - -
Amo19g2180 556 SUPERFAMILY alpha/beta-Hydrolases 39 476 IPR029058 -
Amo19g2180 556 Gene3D - 359 397 - -
Amo19g2180 556 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 138 IPR001563 GO:0004185|GO:0006508
Amo19g2180 556 PRINTS Carboxypeptidase C serine protease (S10) family signature 139 149 IPR001563 GO:0004185|GO:0006508
Amo19g2180 556 PRINTS Carboxypeptidase C serine protease (S10) family signature 523 536 IPR001563 GO:0004185|GO:0006508
Amo19g2180 556 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Amo19g2180 556 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 16 477 IPR001563 GO:0004185|GO:0006508
Amo19g2180 556 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 529 555 IPR001563 GO:0004185|GO:0006508
Amo19g2180 556 PANTHER CARBOXYPEPTIDASE 16 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2180 Amo-Chr19 93730598 93753082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2180 342 556 Calmodulin-binding Proteins AT2G22960 34.884 7.45e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2180 K16296 - gmx:100790895 757.673