Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2178 ATGACAATGGTGGAAGAAGTGGTGGCTATAGAGGAGGAAATCAACGCGGTCGCGGCTCCTCCGCCCAACTTCTCGGTGGTCGAAGACGGCGTTTACCGCTCCAGCTTCCCTAAACCTTCTAATTTTGCTTTTCTTGAAACCCTAAATCTTGAATCCATCATATGCTTATGCCCTGAACCCTATCCCGAGGAGAATCTTGAGTTTCTTCAATCACATAATATCCGTCTCTTTCATTTTGGTATTGAGGGCAAGACGGATCTTTCTCAGTCTATTGTCAAAGATACAATCACAGAGGCTCTCAAAGTTTTAATTGATGTGAAAAATCACCCAGTTTTGATCCATTGCAATAGTGGAAAGCATAGGACTGGTTGCCTTGTTGGATGCATGAGGAAATTACAGAATTGGTGTTTGGATTCAGTGTTTGAAGAGTACAAAAAATTTGCCGGTGCCAAATCAAGAAATACGGATTTGGAATTCATTGAAAGCTTTGATATCTCAAACATGAGACAATGTCTTTACAGCATCATATACCAATACCAAGGATTTGCTTCAAACAAGCCTCGCTTGTTGTTTAGATCCGGTGACAACAATGTACAGAAGCCACAATTGACTAAAGTTTAA 621 0.409 MTMVEEVVAIEEEINAVAAPPPNFSVVEDGVYRSSFPKPSNFAFLETLNLESIICLCPEPYPEENLEFLQSHNIRLFHFGIEGKTDLSQSIVKDTITEALKVLIDVKNHPVLIHCNSGKHRTGCLVGCMRKLQNWCLDSVFEEYKKFAGAKSRNTDLEFIESFDISNMRQCLYSIIYQYQGFASNKPRLLFRSGDNNVQKPQLTKV* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2178 206 CDD PFA-DSP_Siw14 20 164 - -
Amo19g2178 206 ProSitePatterns Tyrosine specific protein phosphatases active site. 113 123 IPR016130 GO:0016311|GO:0016791
Amo19g2178 206 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 20 162 IPR029021 -
Amo19g2178 206 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 14 187 - -
Amo19g2178 206 PRINTS Plant and fungal dual specificity phosphatase signature 18 35 IPR020428 GO:0016791
Amo19g2178 206 PRINTS Plant and fungal dual specificity phosphatase signature 55 68 IPR020428 GO:0016791
Amo19g2178 206 PRINTS Plant and fungal dual specificity phosphatase signature 74 88 IPR020428 GO:0016791
Amo19g2178 206 PRINTS Plant and fungal dual specificity phosphatase signature 91 105 IPR020428 GO:0016791
Amo19g2178 206 ProSiteProfiles Dual specificity protein phosphatase domain profile. 23 172 IPR020422 GO:0006470|GO:0008138
Amo19g2178 206 Pfam Tyrosine phosphatase family 20 168 IPR004861 -
Amo19g2178 206 Gene3D Protein tyrosine phosphatase superfamily 18 167 IPR029021 -
Amo19g2178 206 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2178 Amo-Chr19 93712905 93715330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2178 7 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.000 1.68e-92 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2178 K18045 - jre:108982966 301.212