Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2175 ATGGATCATTCAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGACGCTTGGGTGTAGATCAGGTCTTTTTTGGGTATATTATATCAGACATGATTGGCCTCTCTCGGTTGTTGATGATGAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCAACAGCCAGTCTAAACTGTCGTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGAAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCCGGTATCAAACCAAGCAAAACCTACCAATCATTTGTTGCGGCTGCCGGGGATCTGTATGAAGACCGTCACATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTATATCACCCGGAACAGCTCGCTTATTCAGGAGCAAGCAGAGAGAGAATCAGATGCTGTAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTTAGAGGAAAGGCGAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGTAGCCGAGGTAAAATGCCAATACTTATTATTCGAGTCGAGAGGGATACTGTGTCGTCACGCACTAAGCATCTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATGAAGAGCAGCCACGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTCGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGAAGGAGCTGACTACAATTCTACACCGTGCGTACGATAACGTCATGGCTGAGATGGAATTTTTAAAAGCCAAAAAGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATATGCTAGGTTCAAAGTTGGACAAACAGATCGCAAATGCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGTCTCAAAGCATCAGGGGGGATAGATTTCAGGGTGTATGTTCAACTTTATTTGGGTGTAAAAATTCGCSGGTTATGGGTGTATATTTGATTTGA 1554 0.4331 MDHSTSDCQLNPGEVDYEFESNEVPETLGCRSGLFWVYYIRHDWPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRIKNQLITCSREGKWKSKISPTEKTNPTASLNCRARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRKLSMSIRRTIENNEEAGIKPSKTYQSFVAAAGDLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKYITRNSSLIQEQAERESDAVDFHTVIPCATKSSIEAQFQDAYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVVAEVKCQYLLFESRGILCRHALSILSFEQVSQVSPRYILERWSKKVKRRHTHMKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESKELTTILHRAYDNVMAEMEFLKAKKKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNMLGSKLDKQIANATKKKKTKVLSESQSIRGDRFQGVCSTLFGCKNSXVMGVYLI* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2175 517 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 188 422 IPR031052 GO:0006355
Amo19g2175 517 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 162 IPR031052 GO:0006355
Amo19g2175 517 Pfam FAR1 DNA-binding domain 69 144 IPR004330 -
Amo19g2175 517 PANTHER OS03G0843700 PROTEIN 188 422 - -
Amo19g2175 517 PANTHER OS03G0843700 PROTEIN 50 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2175 Amo-Chr19 93653319 93656641 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g2175 FAR1 7.6e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2175 - - adu:110280503 551.592