Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2164 ATGCTTAGAGTTATTTGTGGCATGGAAACAAGAGTGGGTCGTAGCATTGTGTTATTGTTCTTGTTGGTGGTGCTTGGTTGTGTTTCTGGGAATGATTCTGGAGAATACGACAACTGCAACTGTGATGATGAAGAAGGGATTCTAAGCATACAAAACATACTAGTTGGGCAGAAAGTGAGTGACTTTCTGATCTCCATTGCATATTTCTCCATACCCATTGAGCTACTTTACTTTGTGAGCCGTTCCAATGTCCCGTTTAAACTGCTGTTTCTTCAGTTCATAGCATTCATTGTGCTGTGTGGATTGACCCATTTGCTCAACACCTATTCCTACCATGGCCCTCCTTCTTTCCAACTTGTGGTTTGTCTCACAGTTGCTAAGTTCCTCACTGCCCTTGTTTCTTGTGCAACTGCATTGACCCTTCCACCATTGATCCCTCTCCTACTTAAGGTCAAGATCAGGGAGCTCTTCTTGAGGCAGAATGTCTTGGAGTTGGATCAGGAGGTTGGAATGATGAAGAAGCAGAAGGAGACGAGTTTGCACGTTCGGATGCTCACCAGGGAGATTAGGAAGTCCCTTGATAAGCATACTATATTGTACACCACGCTTGTCGAGCTCTCCAAGGCGCTGGATTTGGACAATTGTGCGGTTTGGATGCCAGATGAGGAGAGAAGGGAAATGCATTTAACACACGAATTGAAAGCTAGCCCATCGAGGGATTTTCGCAATTATGTCCCTAGGAACGATTCGGATGTTTTGGATATAAAAATGAATAGGGGGGTGAGGATTTTGCGGCCGGAATCTGCGCTGGGAATTGCGAGTAATGGCGGCCATGGGGGCACTGGGGGTGCAGTGGCAGCTGTTCGAATGCCCATGCTTCGCGTTTCGAATTTCAAAGGCGGGACCCCGGAGAAGGTTGAGACATGTTATGCTCTACTGGTTTTGGTTCTTCCAAAATCAAACTTGCGTGTTTGGACTAACCAAGAGCTCGAGATAGTGGAAGTTGTTGCTGATCAGGTAGCTGTGGCCTTGTCTCATGCATTCATTCTTGAAGAATCACAGAGAATGAGACAGAAACTCGCAGAGCAGAACCGAGTATTGCAGCAGGCTAGAAAGGATGCAATGATGGCCAGCCAAGCGAGGAAAGCGTTTCAGAAAGTGATGAGTCATGGAATGCGGAGGCCTATGCATTCCACTCTGGGGCTTCTTTCGCTGTTACAAGATGAAAATATGAGACCTGAACAGAAGATTATTGGCAACTCAATGTTGAAAGTTAGCAGGGTGCTCTCAAATTTAATTAATGACGTAGTAGGGATTTCAGAGAATGAAAAGGGAAGCTTTCCATTAGACATGAAACCTTTCCTTCTACATTCAATGTTGAAGGAAGCCGCTTGTATTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAGATTGATGTCCAGAAATCTTTGCCTGATCTGGTTGTAGGTGATGATGAGAGGGCCTTACAAGTAATTCTGCATATGATTGGCGATTTATTGAACACATACGATCAAGGGAACCTCAAGTTTCGTGTCTTTTTAGAAAGTTATGGTGGAGATAAGGATGATAAAATCAATGAAGCATGGAATATGAGGAATCAAAATGATTATGTACATATCAAATTTGATTTTCAGGTAATCAGTAGTTCTCAATCGGAGGAGCTGGTTCCGACCATAAATTATGCCAGTCGTGGGTACCACAACAATGAACAAACAGAGGGCATGTGCTTCAGCTTGTACAGAAAGTTGGTGGAGATGATGCAAGGTTATATCTGGATATCACCAAATCCTCAGTGTTTGCCACAAGGCATGACACTTCTTCTGAAGTTTCGGAAAGCACCAATGCTCGGAAAATCCATAGTTGCGCCGAGAGATTATTCGAACTCGCAGTTTAGAGGCCTTAAGGTTGTGTTAGCCGACGATGACTGTGTAAACCGGATTGTGACGAAGAAGCTACTCGAGAAGCTTGGATGTCAAGTAACTGCCGTTTCATCGGTTTCGAGTGCCTGA 2037 0.4433 MLRVICGMETRVGRSIVLLFLLVVLGCVSGNDSGEYDNCNCDDEEGILSIQNILVGQKVSDFLISIAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGLTHLLNTYSYHGPPSFQLVVCLTVAKFLTALVSCATALTLPPLIPLLLKVKIRELFLRQNVLELDQEVGMMKKQKETSLHVRMLTREIRKSLDKHTILYTTLVELSKALDLDNCAVWMPDEERREMHLTHELKASPSRDFRNYVPRNDSDVLDIKMNRGVRILRPESALGIASNGGHGGTGGAVAAVRMPMLRVSNFKGGTPEKVETCYALLVLVLPKSNLRVWTNQELEIVEVVADQVAVALSHAFILEESQRMRQKLAEQNRVLQQARKDAMMASQARKAFQKVMSHGMRRPMHSTLGLLSLLQDENMRPEQKIIGNSMLKVSRVLSNLINDVVGISENEKGSFPLDMKPFLLHSMLKEAACIAKCLCVYKGFGLEIDVQKSLPDLVVGDDERALQVILHMIGDLLNTYDQGNLKFRVFLESYGGDKDDKINEAWNMRNQNDYVHIKFDFQVISSSQSEELVPTINYASRGYHNNEQTEGMCFSLYRKLVEMMQGYIWISPNPQCLPQGMTLLLKFRKAPMLGKSIVAPRDYSNSQFRGLKVVLADDDCVNRIVTKKLLEKLGCQVTAVSSVSSA* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2164 678 Gene3D - 634 678 - -
Amo19g2164 678 ProSiteProfiles Histidine kinase domain profile. 387 623 IPR005467 -
Amo19g2164 678 CDD HisKA 378 440 IPR003661 GO:0000155|GO:0007165
Amo19g2164 678 PIRSF Ethylen_sen_hybr_HK 12 678 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Amo19g2164 678 Gene3D - 182 356 IPR029016 -
Amo19g2164 678 Pfam GAF domain 196 344 IPR003018 GO:0005515
Amo19g2164 678 CDD HATPase_ETR2_ERS2-EIN4-like 486 617 - -
Amo19g2164 678 ProSiteProfiles Response regulatory domain profile. 644 678 IPR001789 GO:0000160
Amo19g2164 678 PANTHER ETHYLENE RECEPTOR 16 674 - -
Amo19g2164 678 Coils Coil 350 373 - -
Amo19g2164 678 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Amo19g2164 678 Gene3D - 446 620 IPR036890 -
Amo19g2164 678 Gene3D - 366 445 - -
Amo19g2164 678 SMART gaf_1 194 354 IPR003018 GO:0005515
Amo19g2164 678 SUPERFAMILY GAF domain-like 197 347 - -
Amo19g2164 678 PANTHER TWO-COMPONENT HISTIDINE KINASE 16 674 - -
Amo19g2164 678 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 365 445 IPR036097 GO:0000155|GO:0007165
Amo19g2164 678 SUPERFAMILY CheY-like 639 676 IPR011006 -
Amo19g2164 678 SMART HisKA_10 380 445 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2164 Amo-Chr19 92212453 92216401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2164 28 674 Miscellaneous Gene Families AT3G04580 57.943 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2164 K14509 - gmx:100811462 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1186 16 20056333 20061331 Amo19g2164 19 92212453 92216401 ECH
Amo19g2164 19 92212453 92216401 Amo19g2164 19 92212453 92216401 ECH