Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2154 ATGAAGAATCAGAAATCTCCCAAATACAATCTTCCATCGAAGATCTTATGTTGTGTCATTGATGCCAAGATGGAAAGTAGCAAGAATATGACAATGAAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTCAATGGAAGTTTAAGCATATTTACAGAGTGAGATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTAGCTCCATAGATGTTAAAGTTCGAATATGGAGAATGCACGAAGAGCGAGTGGTTGACTGGGCAGACATTCGAGATGTCATAACTGCCATAAGTTACCAACCAATTGAAAAGGGATTTGTTGTTAGTTCCCTTACCAGCATATGTCACTTTTATGTTGCTTCGGATTTAGGCAAACATTTCCATCTTGAGGCACAGATTAATGAGAACACCAATATCTTGCAACAAGATAACTGGAATTCAGTTTTCCAAGAAAAACCACTAAAGAGTCATGATCACATCAAAAGATTTCGAAGTCCGAATATTAGAAGGCATGGAACTTGTTCAGACATTTAA 549 0.3698 MKNQKSPKYNLPSKILCCVIDAKMESSKNMTMKNPTQELVAKDIHGVQWKFKHIYRVRCIQFNPVDENYFISSSIDVKVRIWRMHEERVVDWADIRDVITAISYQPIEKGFVVSSLTSICHFYVASDLGKHFHLEAQINENTNILQQDNWNSVFQEKPLKSHDHIKRFRSPNIRRHGTCSDI* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2154 182 SUPERFAMILY WD40 repeat-like 49 126 IPR036322 GO:0005515
Amo19g2154 182 PANTHER WD REPEAT DOMAIN 44 51 139 IPR040324 -
Amo19g2154 182 Gene3D - 26 142 IPR015943 GO:0005515
Amo19g2154 182 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 92 IPR001680 GO:0005515
Amo19g2154 182 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 51 139 - -
Amo19g2154 182 SUPERFAMILY DNA-binding pseudobarrel domain 29 58 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2154 Amo-Chr19 91062422 91065515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2154 29 56 B3 DNA Binding Superfamily AT4G23980 71.429 1.07e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2154 K20241 - gmx:100801576 130.183