Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2122 ATGGCGCGGAGGTTGTTGGCGGCACTGGCAGCCATTTACATAACCGTTGCCACACTTTTCGGAGATTCTGTTGACTGCTTTGATGGTGGTGGAAAATCCGAACCACAGTCCATTCTCTACGACGAGCGCATTCTCCCCGCCGATTACCCCTGCGCTAAATACATGCGAAAGTTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCTTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTAGTAGTGACATTCTTGCAAGGGCTAAAAATGAGATAGGCAAAACAGCTGCATTTTGCATTCCTGCAATGGAAAAAATTGACCAGGATAACAATGCGGATAAGCTTTTGTCCCTAGAATTCCAACCTTCTATAGTTATTAATATTGATTTTCCCAAGAATTCAGAAACTTATCTCCCCAGGGTCGGTCGCTCAGGGAGATTTGAGCATCTTGGTTTAGTAGTTAACTTGATCACTTATTGGGACTGCTTTAATTTGATTGAACAAGAAATTAAAATTGAAATAAAGCAAATTCCACCACACATTGAC 555 0.418 MARRLLAALAAIYITVATLFGDSVDCFDGGGKSEPQSILYDERILPADYPCAKYMRKLLMGIYEKGFERLSPIQEESIPIALTSSDILARAKNEIGKTAAFCIPAMEKIDQDNNADKLLSLEFQPSIVINIDFPKNSETYLPRVGRSGRFEHLGLVVNLITYWDCFNLIEQEIKIEIKQIPPHID 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2122 185 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 55 117 - -
Amo19g2122 185 Gene3D - 52 126 IPR027417 -
Amo19g2122 185 Pfam DEAD/DEAH box helicase 72 117 IPR011545 GO:0003676|GO:0005524
Amo19g2122 185 PANTHER ATP-DEPENDENT RNA HELICASE DEAD-BOX, CONSERVED SITE-RELATED 55 117 - -
Amo19g2122 185 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 127 185 - -
Amo19g2122 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 172 IPR027417 -
Amo19g2122 185 Gene3D - 127 185 IPR027417 -
Amo19g2122 185 PANTHER ATP-DEPENDENT RNA HELICASE DEAD-BOX, CONSERVED SITE-RELATED 127 185 - -
Amo19g2122 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 127 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2122 Amo-Chr19 85655452 85658114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2122 126 185 Eukaryotic Initiation Factors Gene Family AT5G11170 38.095 2.11e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2122 K12614 - aip:107643629 111.309