Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2081 ATGGTGACGAACACCAACAAGGTCGTGAAAGTGAAGAGAGACACGCTAAGAGCATGCATGACATGCCCTCTTTGCAATAACCTCCTCAAAGATGCCACCACTATCTCTCTCTGCCTGCACACATTTTGTAGGAAGTGTATATATGAGAAGCTCTCGGATGAGGAGGTGGATTGCTGTCCTGTGTGCAACATTGATCTAGGCTGCCTTCCGGTGGAAAAACTCAGGTTCCTGTTAATTGTATGCAGGGCAGACCATAATTTACAAGACATAAGGGCTAAAATATTTCCTTATAAGAAAAGGAAGACCAAGATCAAGGAACCAGAAGTTTTGCCTTCAGTATCCCCACCTGCAAAGAGGAAGGAAAGATCACTTTCATCGTTGGTAGCTCCGAAAGTTTCGGCACAAACAGGCCTTACAGGAAAGAGGACAAAAACTGTGTCAAGAAAGGCTGCTGCATTACGTGGGTGCAGTTTTATTCTTGAAGAATCCATAAAAAAGGAAGAAACAAATGGTGGAGATAACATGGATTTGTCAACGCCCGAGCCTTCTAAGAAGAACAAGTCCAGCGAAAGCACGGAGAACAGTGTAGAACTTACAGAAGGTAAGGCTGATCTCTGGACACCGTTAAACTGCCTTGTCGAAGCCGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAGTTCCCCCTGCCAAATCGGACTCTCCAACTACTGCACATGATGCACGAGATATGTCRGAAATCACAAACAAAGCCGAGCTACCTGCTTCAGGTCAGAATGAAATAYGCATTCCAAAATCTAAGAGTAAGGATAATGGACACAAAGCAAAATTTGGTGATGGCAAGGATGGCAACAGCGTGCCTTCGGGACCAGTGAAGCGAAGAAGGTTGCGGCCTTCTGGTCAGAAAAAGGTTGCGCCGACTGAGGGGTCTACCTCAGCCCAAGTCATGCTAGATGCAACAAGGGGATACTGCAACAGAAAGAACACCCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCGTTGCCACAGGTCTCAGCATGTTACTTAAGAATAAAGGATGGCACTGTGCCTGTTTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTAGAAATAATGTGCCGGGGTCAACCAGTGCTGCCATCTCTGCAACTACACAACCTTGTAGATTTGTGGTTCAGAACAGCATCAACWTCAAAAAAGATACCAGCATCTGTAGGATCATCAGCCAAGGATTTTGTTATGGTTTTATCATATTGTCGAAAGGCCTTGCCACCTTGA 1326 0.4495 MVTNTNKVVKVKRDTLRACMTCPLCNNLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCLPVEKLRFLLIVCRADHNLQDIRAKIFPYKKRKTKIKEPEVLPSVSPPAKRKERSLSSLVAPKVSAQTGLTGKRTKTVSRKAAALRGCSFILEESIKKEETNGGDNMDLSTPEPSKKNKSSESTENSVELTEGKADLWTPLNCLVEAANRTKSSRSNSQAVPPAKSDSPTTAHDARDMSEITNKAELPASGQNEIXIPKSKSKDNGHKAKFGDGKDGNSVPSGPVKRRRLRPSGQKKVAPTEGSTSAQVMLDATRGYCNRKNTPIWFSLVASEDQKGDVPLPQVSACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2081 441 MobiDBLite consensus disorder prediction 216 234 - -
Amo19g2081 441 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 6 439 IPR044807 GO:0004842
Amo19g2081 441 ProSiteProfiles Zinc finger RING-type profile. 22 63 IPR001841 -
Amo19g2081 441 SMART ring_2 22 62 IPR001841 -
Amo19g2081 441 Gene3D - 314 417 - -
Amo19g2081 441 Pfam Zinc finger, C3HC4 type (RING finger) 22 62 - -
Amo19g2081 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 115 IPR013083 -
Amo19g2081 441 MobiDBLite consensus disorder prediction 268 282 - -
Amo19g2081 441 MobiDBLite consensus disorder prediction 167 201 - -
Amo19g2081 441 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Amo19g2081 441 MobiDBLite consensus disorder prediction 216 311 - -
Amo19g2081 441 SUPERFAMILY RING/U-box 16 70 - -
Amo19g2081 441 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 6 439 - -
Amo19g2081 441 MobiDBLite consensus disorder prediction 253 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2081 Amo-Chr19 81513611 81519057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2081 8 360 C3H Transcription Factor Family AT2G30580 42.204 2.97e-77 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2081 K16277 - gmx:100783999 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1133 16 19052425 19054162 Amo19g2081 19 81513611 81519057 ECH
Amo19g2081 19 81513611 81519057 Amo19g2081 19 81513611 81519057 ECH