Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2057 ATGGAGCAGTATGATATACTTGAGCAAATTGGCAAAGGTGCTTTCGGTTCTGCGCTTCTCGTGAGACATAAGCATGAGAAGAAAAAATATGTGCTCAAGAAGATTCGCCTTGCACGCCAAACGGAGCGAACTCGTAGATCTGCACACCAGGAGATGGAGCTTATTTCTAAATTTCGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATCATAGGTTACTGTGAGGGTGGGGATATGGCGGAAGCTATAAAGAAAGCTAATGGTTTGCTGTTCCCAGAGGAGAAACTCTGTAAGTGGCTCGTTCAACTTCTTATGGCACTTGACTATTTGCACATGAAGCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTTGGAACTCCTAGCTACATGTGCCCCGAGCTCCTAGCTGATATACCTTATGGTTCCAAATCGGATATTTGGTCCCTGGGATGTTGTATATATGAAATGACATCACTCAAGCCTGCATTTAAAGCATTTGATATACAAGCATTGATTAACAAGATTAATAGGTCCATAGTGGCTCCATTACCAACAAAATATTCTGGTTCATTTCGAAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTGCAGAGCTGCTTGGGCACCCACATCTTCAACCATATGTTCTTAAGATTCATCTCAAAATTAATAGCCCCAGGCAAAATTCATTACCAGTCCAATGGCCAGAATCCAAGTACATGAAGAAAACCAGATTCTTGGAGCGGAAAGATGAACATGTTTCTATCTATAGGGATAAAAGGCGTTCTTTTAGCAATGATCGGACTCTAAACCCTAGTATTTCTGGAGCTGATCAAGATTCTGTATGTTCCACCCTAGAAATAGATTGTACTCCTGATGATTTAAATCAGAGGTTAGCAGAGTTGAGTGTCAGAGGTAGCCATGGAGTGAAGTCAATCCATAAGCCTATTCTCTCCAGAACTTCTAGTATGGCTAAGATTCCCAGGATCAGTCATGCAAAACTTTCTTCTACCAACAAGAAATTAATGGAACCCACAAAGGATCTTAAGGCAGGAAGGCAATCTCTTCCTGCTTCAAACAATTCCACAAAATCTACCCAAACAAATCGCAGAGCATCCTTTCCACTGCCATCAAAGGGTACTCAGAAGCCTCCTCACAGGCCTAGTAGTATTGGTTTGCTTAGCCATGTATCTTCACCAGATATTTCAGTCAACTCTCCCCGAATTGATAAAATAGCTGAATTCCCATTAGCATCATATGAAGATCCACTGTTCCGATTCAACAGATCATCAACTGTGATTGACAAATGCACAATAGATGTATATGATAAAGCCTCTGTTAGGGCTTGTAATGCTGATACTTGGCAAGGAATCAAGCGCAGCGTGTTGAAGGAAAACGACGAGGACAAAAAAAGTGGTTCATCTGATCAAAATGCAACAGCAGGTGCATCGAGTCACACCTCTTCGGATCTGCGCCGCCGACAGTTTGATACTTCATCGTACCAACAGAGGGCCGAAGCCTTGGAAGGGCTGCTTGAATTCAGTGCAAGATTGCTGCAGCAGGCAAGGTATGATGAACTCGGGGTTTTGTTGAAACCATTTGGGCCTGAGAAGGTTTCCCCAAGGGAAACTGCAATCTGGCTGAGTAAGAGCTTCAAAGAGAACACATTCAACCCTGAAGAATCCCCGTAA 1830 0.4246 MEQYDILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERTRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGLLFPEEKLCKWLVQLLMALDYLHMKHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINRSIVAPLPTKYSGSFRSLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINSPRQNSLPVQWPESKYMKKTRFLERKDEHVSIYRDKRRSFSNDRTLNPSISGADQDSVCSTLEIDCTPDDLNQRLAELSVRGSHGVKSIHKPILSRTSSMAKIPRISHAKLSSTNKKLMEPTKDLKAGRQSLPASNNSTKSTQTNRRASFPLPSKGTQKPPHRPSSIGLLSHVSSPDISVNSPRIDKIAEFPLASYEDPLFRFNRSSTVIDKCTIDVYDKASVRACNADTWQGIKRSVLKENDEDKKSGSSDQNATAGASSHTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSFKENTFNPEESP* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2057 609 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2057 609 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Amo19g2057 609 CDD STKc_Nek 3 258 - -
Amo19g2057 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Amo19g2057 609 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 594 - -
Amo19g2057 609 MobiDBLite consensus disorder prediction 369 446 - -
Amo19g2057 609 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2057 609 MobiDBLite consensus disorder prediction 399 422 - -
Amo19g2057 609 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2057 609 PANTHER SERINE/THREONINE-KINASE NEK4 1 594 - -
Amo19g2057 609 Gene3D Transferase(Phosphotransferase) domain 1 86 320 - -
Amo19g2057 609 SUPERFAMILY Protein kinase-like (PK-like) 1 299 IPR011009 -
Amo19g2057 609 MobiDBLite consensus disorder prediction 511 542 - -
Amo19g2057 609 MobiDBLite consensus disorder prediction 521 535 - -
Amo19g2057 609 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2057 Amo-Chr19 79076086 79082332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2057 10 259 MAP Kinase Kinase Kinase AT1G53570 31.373 7.52e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Amo19g2057 Pkinase 4.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2057 K08857 - gmx:100804898 998.038