Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2042 TTTAGGGGCAACGACACGTGCACCAACTTCGTGATTCATCTCCGTGAAGCTCTGAACAACAAACAGCAAGTTAAAGCGGTCATAGATGAGGATCTCCCAAAGGGGCAGAGCATAGGGCCTTCACTCTCAAAGGCTATTGAAAGTTCACATGTATCTATTGTTGTTTTCTCACAGGAATATGCTTCCAGTGAGTGGTTTAGGCTCAAGAGAAAAACAGGGACATGTCTTGTGTATTTGATCAACATAGAGCTTCTTCAGGAAGTGGTTAATATGGGATTTGACAGAAATCAATTGGTTGAATGTTTATGCAACAGGATCCAAAATGAGATGGGGCTGGTGATGATTTGTTTAAAGAGCTATGGAGGCTGTGCAGGGACATTAATGGATGTTCCTTGTGTTCAAGACAAAGTTTTCTATTTCCCTCAGGGTCACATTGAATTGGTATGA 447 0.4183 FRGNDTCTNFVIHLREALNNKQQVKAVIDEDLPKGQSIGPSLSKAIESSHVSIVVFSQEYASSEWFRLKRKTGTCLVYLINIELLQEVVNMGFDRNQLVECLCNRIQNEMGLVMICLKSYGGCAGTLMDVPCVQDKVFYFPQGHIELV* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2042 148 Pfam TIR domain 1 67 IPR000157 GO:0007165
Amo19g2042 148 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 72 IPR035897 -
Amo19g2042 148 ProSiteProfiles TIR domain profile. 1 114 IPR000157 GO:0007165
Amo19g2042 148 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 65 IPR044974 GO:0006952
Amo19g2042 148 Gene3D - 1 73 IPR035897 -
Amo19g2042 148 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2042 Amo-Chr19 76765261 76767705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2042 106 148 B3 DNA Binding Superfamily AT1G43950 46.939 3.25e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2042 - - ahf:114925841 131.724