Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2013 ATGTTCTTTACCTTCTCTTTGGAGTTTGTTTTGTTTTGTTTTGATTTAGGTGGAAGACTATTGATTGTTAACAAGGCTTTTCCAGGAGGAGAGCGACCTGAATGCCCACCCCGTTCATTCGAACAGGCTTTTAGAATCTATGTTGGTAACTTGTCTTGGGATGTTGACAATGGTTGCCTAGAGCAGATTTTCAGCGAATACGGTAAGGTTGTGAATGCCCGCGCAGCATATGACAGAAAGATTGAACAATCATGCGGCTTTGGTTTTGTCACAATAACCGATGATATTGAAATGAACGACGCAATTGCTGCTCTTGATGGCCAGAGTTTGGATGGAAGGGAAATAAGAGTGAATGTTGCTGAGGACATACCCAAACGCTCTTTTTGA 387 0.4212 MFFTFSLEFVLFCFDLGGRLLIVNKAFPGGERPECPPRSFEQAFRIYVGNLSWDVDNGCLEQIFSEYGKVVNARAAYDRKIEQSCGFGFVTITDDIEMNDAIAALDGQSLDGREIRVNVAEDIPKRSF* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2013 128 SMART rrm1_1 45 118 IPR000504 GO:0003723
Amo19g2013 128 PANTHER OS02G0815200 PROTEIN 13 127 - -
Amo19g2013 128 SUPERFAMILY RNA-binding domain, RBD 36 125 IPR035979 GO:0003676
Amo19g2013 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Amo19g2013 128 PANTHER RIBONUCLEOPROTEIN 13 127 - -
Amo19g2013 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 116 IPR000504 GO:0003723
Amo19g2013 128 Gene3D - 30 127 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2013 Amo-Chr19 73969732 73971003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2013 14 121 Eukaryotic Initiation Factors Gene Family AT3G16380 34.188 4.53e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2013 - - ahf:112778713 236.498