Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2005 ATGGCTGGTAACAATAATAACGGGTCGGAAGGTTTGGGCGACGATTTCTTCGAACAGATCTTGGCGGTTCCAAGTGAGTATGGCGGCGGTGGCGGTAGAACATTAGTGGGGTCCATGCCAATGGTGCTTCAGTTGGGGTCCACAGTATCAAGGACTACTGTTCCGGATGGCTTAAGAATGGGGATGCCTTTGGGTTTGAATTTGGAGCAAACTGGTTTCCTTAGACGCTTTCCTGAACAAGTTTCTGATGTTGAGGCTGCCATTAACAACAACCACCACCACCAACAACAATACCTTCGTCTTAGTAACAATACCAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGCTCTCCATCTTCCTCTTCTACTGCTGGAATCACTACTGATCGGGATTCGATGCACATGAGAGGTTTGTTTCCAGCGTTTGGACAGTTGCATAATACTACCCCCCTTCCTCCTCCTACTCAGCCACCTCTTCGCCCCACTCTTCCATCTCCTCTCCACCACCACCAGGCATTTCAGAGGCAGCAAGCACCAAATCCAGTGTCTGTGACTGCTCTGCCACAACAACCACCGGGGATACGCCCTCGAGTGCGAGCAAGAAGAGGCCAAGCTACCGATCCTCACAGTATTGCTGAGAGGTTACGTCGTGAGAGGATTGCCGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGCCATGCTTGATGAAATTGTGGATTATGTCAAGTTTCTAAGGCTCCAAGTTAAGGTATTGAGCATGAGTAGACTAGGTGGGGCTGGCGCTGTTGCCCAGCTTGTGGCTGATGTTCCTCTATCTGCTGTCGAGCAGGGTGAGGAAATAGAAGGCGGAGGGAACAACGAGCAAGCATGGGAGAAATGGTCAAATGATGGAATAGAGCAACAAGTTGCAAAGTTAATGGAAGAAGATGTTGGAGCTGCCATGCAATTCCTTCAGTCCAAGGCACTTTGCATTATGCCTATTTCTCTTGCCTCTGCCATCTTCCGTATGCCTCCTTCAGAACCATCATCACTCATCAAGCCTGAATCTAACTCCCATTCATAG 1116 0.4677 MAGNNNNGSEGLGDDFFEQILAVPSEYGGGGGRTLVGSMPMVLQLGSTVSRTTVPDGLRMGMPLGLNLEQTGFLRRFPEQVSDVEAAINNNHHHQQQYLRLSNNTNNNNNNNNNNNNNNNNNNNSSPSSSSTAGITTDRDSMHMRGLFPAFGQLHNTTPLPPPTQPPLRPTLPSPLHHHQAFQRQQAPNPVSVTALPQQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEEIEGGGNNEQAWEKWSNDGIEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPPSEPSSLIKPESNSHS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2005 371 MobiDBLite consensus disorder prediction 152 217 - -
Amo19g2005 371 SMART finulus 219 268 IPR011598 GO:0046983
Amo19g2005 371 MobiDBLite consensus disorder prediction 159 173 - -
Amo19g2005 371 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 10 358 - -
Amo19g2005 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Amo19g2005 371 MobiDBLite consensus disorder prediction 178 193 - -
Amo19g2005 371 MobiDBLite consensus disorder prediction 102 137 - -
Amo19g2005 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 272 IPR036638 GO:0046983
Amo19g2005 371 Pfam Helix-loop-helix DNA-binding domain 218 262 IPR011598 GO:0046983
Amo19g2005 371 Gene3D - 208 270 IPR036638 GO:0046983
Amo19g2005 371 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2005 Amo-Chr19 72176217 72184801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2005 175 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 71.649 5.91e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g2005 HLH 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2005 - - lang:109355094 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2005 19 72176217 72184801 Amo19g2005 19 72176217 72184801 ECH