Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1979 ATGGCTCCGATTGCAGTTGGAGATGTCATCCCAGATGGCACCTTGGCCTTCTTGGACAACGATAACAAGCCACAGTTTGAGAGCAGAAAGAGCTTAAAGGAAGTGTTGGGAGTGAGGAGTACACACAAGATAGAACATACCAACCAAGTTGGACACTTCCAGAAGGTTCTAACTGCCATTGGAAACTTCTGTATCTGTTCCATTGCGATTGGTGTGATGGCTGAGATCATTGTCATGTATCCAATTCAGTACCAAAAATACAGAGATGGAATTAATAATCTTTTGGTTCTATTGATTGGTGGAATCCCCATTGCTATGCCTACTGTGTTGTCTGTGACAATGGCCATTAGATCTCACAGGCTTTCACAACAAGGCGCCCTCATGAAGCGAATGACTGCCATAGAAGAAATGGCTGGAATGAATGTGCTTTGCAGTGACAAGACAGGAACACTCACACTTAACAAGCTTAGTGTTGACAAGAACTTGATTGAGGTCTTTACTAAAGGAGTGAACAAGGATCATGTGATCCTTCTCGCCGCGAGAGCTTCCAGGATTGAAAACCAGGATGCCGTTGATGCTGCTATTGTTGGAATGCTTGCAGACTCTAAAGAGGTAAGGGCTGGAATCAGAAAGCTATTTCAAGACAAGTTCTTACAGCAAAGTGCAAACAATCAAGTGAAGAAAGAAGAGAAGGAAGAAGAAGACAGCTTGGTTCTTGCCATGGAAATGCTGGGTCTGAATGTGGTTCCACTGGCGGTGAATTCAGCTGTTGAGCTTTGTGTGTTTGACACCATAGCCAAATCTGGTGAAGGCGCCATGCTCTCTACAAAGCAAATTGCGTCTCAGATTAGGAGCAACAACCCAGAAGCACCTCACATGCTGGATCACCTTCTTAGGTTGTTGGCAAGTCACTCTCTCCTTCGTTGCTCTGTTTCCCAACAAGATCATAGTCACAGACTCTACAGCCTCTCTCCTCGCTCCAAGTATTTTGTCACTGATGCCGATGATGGCAACTCGTTGGGACCAACCTTGGCTTTGCTTCTCGACAATGTCTTCTACCAAAGCTGGAAGGAGGTGAAAGGAGCAATTATGGAAGGTGGAATTCCATTCAACAGGGTTTATGGCATGCATGCCTTTGAGTATCCAGGCAAAGATCAAAGGTTTAATGAGGTGTTCAACAAAGCTATGTTTTTTTAG 1197 0.4461 MAPIAVGDVIPDGTLAFLDNDNKPQFESRKSLKEVLGVRSTHKIEHTNQVGHFQKVLTAIGNFCICSIAIGVMAEIIVMYPIQYQKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIRSHRLSQQGALMKRMTAIEEMAGMNVLCSDKTGTLTLNKLSVDKNLIEVFTKGVNKDHVILLAARASRIENQDAVDAAIVGMLADSKEVRAGIRKLFQDKFLQQSANNQVKKEEKEEEDSLVLAMEMLGLNVVPLAVNSAVELCVFDTIAKSGEGAMLSTKQIASQIRSNNPEAPHMLDHLLRLLASHSLLRCSVSQQDHSHRLYSLSPRSKYFVTDADDGNSLGPTLALLLDNVFYQSWKEVKGAIMEGGIPFNRVYGMHAFEYPGKDQRFNEVFNKAMFF* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1979 398 PANTHER CALCIUM-TRANSPORTING ATPASE 39 213 - -
Amo19g1979 398 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 338 397 IPR029063 -
Amo19g1979 398 Gene3D - 247 370 IPR036388 -
Amo19g1979 398 Gene3D - 48 140 - -
Amo19g1979 398 PANTHER PLASMA MEMBRANE ATPASE 39 213 - -
Amo19g1979 398 SUPERFAMILY Calcium ATPase, transmembrane domain M 44 141 IPR023298 -
Amo19g1979 398 Gene3D - 156 235 IPR023299 GO:0000166
Amo19g1979 398 Pfam Dimerisation domain 253 302 IPR012967 GO:0046983
Amo19g1979 398 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 45 186 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo19g1979 398 Gene3D - 141 155 IPR023214 -
Amo19g1979 398 ProSitePatterns E1-E2 ATPases phosphorylation site. 146 152 IPR018303 -
Amo19g1979 398 SUPERFAMILY "Winged helix" DNA-binding domain 231 333 IPR036390 -
Amo19g1979 398 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 241 398 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1979 Amo-Chr19 69334708 69337019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1979 39 301 Primary Pumps ATPases AT4G30190 60.000 1.06e-94 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1979 K01535 - gmx:100816905 293.123