Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1942 ATGCACGCTGAGGGAGTGAATGCTGCACTCATTGTTTCAACTGAGTGGTCCCCTGAGAGCAACCAAACACCCAAGACCAATTTCATTGAAGCCCCAAAGCAAGCAAAGCCCATTGACATGACTCAAAGGCACAAGAAAAAAAAATCTTTGATGAATTTGATCCCTAAAAATCTTGATTTTGAAATTCTATCTATAGAACTAGGTTTTAACAACCTCGCGCGCATGCCCCCCTGTGTAACTTCTTTTGTGCGAGTTATATTCTTCGCTTTTGGTTCTGTACGACTTCGTCACATGCCCCCTTGTGTGACTTCTTTTGTGCAAGCTATATTCTTCGATTTTGGTTCTGTGGGCCATTTAGAGCGTTGGGTGAAATCAATTTTTGAGACTATCATGGCACCTAATCCTAGAGTTACCAATGCCTATAATGCTATGAGGACCTTAGGCATTTCTGATGATGAGGTGAGGCCTGTCTTGAAAAGGTTGCTCAAAGTGTATGGTAATAGCTGGGAGCTTATTGAAGAAGACAATTATCAAACACTTGTACATGCATACTTTGAGTCAATGGAATATCAGCAAGGGGAAGGTAAGGGAAAAGCTCCAATCAGTAATCATGATGGAGAAAGAGCAAGACTGAAACTACAGATGATATCTGTAGAGGACAATGAAATACTTTCAAAGACATCCAAAAAGGAAATCATTAGGCCATCTCAGGCATCTAAAGAAGATATAAAACTGACAAATAGTTCTCAACCATTGCAGACAAGGTTGAGTGAGGTAGAAATTATCTCAAGTTTATCTTGCATGGATGCTAGAGATAGTAGAAAATTGTGCCATGAGAATGCAGCATCTGCAGGGCACTGTGGAGATTATTTTGATGGATCTAGCCGTTCCCACATCCAGAAGATACATATGTCAAGTGATCGTTATGAGAAAGAACTTATAATACTAAAAGCTAAGAAACCGAAATTACATCTTGGACCTGTTTCATCACATCTTAAAGGCCCTTGTGATGATTCAAATGTAAATCGTCGTTTCAAATTTATATCAGCTCTTTATCAAAATGGGCCAAATCCCAATCATGCCAATTTGACTAACATGGTACAACAAGTTGTTGTCCATCCTGAATATAATTCTGCAGGCCCATGCGATGATTCAAACATAAATACTCGTTTCAAATCTATATCATCTCTTTATCAAAATGGGCCAAATCCCAATCATGCGAATTTGACTAACATGGTACAACGAGCTGTTATTCATCCTGAACATAATTCTAGAGGCCCATGCGATGATTCAAATGTAAATTGTCGTTTCAAATCTATATCAGCTCTTTATCAATATGGGCCAAATCTCAACCATGCCAATTTAACAAAAATGGCACAACAAGCTATTGTTCATGCTGAAAATAGTTATGTTCAATTTTTGAGTGACATAACAAAAGGTTCTGAAAAGGTTGTAATTTCATTATTAGATGACACTGGAAGTGAGGAGTTGCCTAAGTTTAATTACATACCAAATAATATAATCTATCAAAATGCTAATGTGAACATTTCACTTGCTCGGGTTGCGGATGAGGGTTGTTGTTCTGATTGTTTAGGCAACTGTCTTTCTTTGACATTTCCTTGTGCATGTTCTCAAGAAACTGGTGGGGAGTTTGCTTATACTCGAGAAGGTTTGTTGAAGGAAAAGTTCTTAGAAGCATGCATAGCTATGAAAATCAAACCTCAGCCATATCATTTTGTGTATTGTCAAGAATGCCCAATTTATAAAGGGAGTGAGCACATGCCTGAAGAATGCAAGGGGCATTTGGTTAGAAAGTTTATAAAGGAATGTTGGAGGAAATGTGGATGTGATATGCAGTGTGGAAATCGGGTAGTGCAGCGAGGTTTAAGATGTAAACTGCAGGTATTCTTGACTCAGGAAGGAAAGGGCTGGGGCATTAGAACACTAGAAGATTTGCCCAAAGGTTGCTTTGTATGTGAGTACGTCGGAGAAATATTAACCAATGCAGAATTGTATGAAAGGGTATTACACAAAAGCAGCAAGGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCAGAAAGGGTGTTAAAGGATGATGAGGCACTGTGCTTAGATGCAACTTATAATGGAAATATTGCAAGGTTTATCAATCATAGATGCTTTGATGCAAATTTGATAGACATTCCTGTTGAAGTGGAGATTCCTGATCGCCACTATTATCATATTGCTCTCTTTACTAATAGGAAAGTGAAAGCATACAAAGAGTTGACATGGGATTATGGTATTGACTTTGATGATCAGGAACATCCTATTAAAGCATTTCAATGCTGCTGTGGAAGTACCTTCTGCCGTGACAAGAAAAAGAAAGGAACTGGCATGAAAGCTAAAAAACAAAGGTAG 2412 0.3852 MHAEGVNAALIVSTEWSPESNQTPKTNFIEAPKQAKPIDMTQRHKKKKSLMNLIPKNLDFEILSIELGFNNLARMPPCVTSFVRVIFFAFGSVRLRHMPPCVTSFVQAIFFDFGSVGHLERWVKSIFETIMAPNPRVTNAYNAMRTLGISDDEVRPVLKRLLKVYGNSWELIEEDNYQTLVHAYFESMEYQQGEGKGKAPISNHDGERARLKLQMISVEDNEILSKTSKKEIIRPSQASKEDIKLTNSSQPLQTRLSEVEIISSLSCMDARDSRKLCHENAASAGHCGDYFDGSSRSHIQKIHMSSDRYEKELIILKAKKPKLHLGPVSSHLKGPCDDSNVNRRFKFISALYQNGPNPNHANLTNMVQQVVVHPEYNSAGPCDDSNINTRFKSISSLYQNGPNPNHANLTNMVQRAVIHPEHNSRGPCDDSNVNCRFKSISALYQYGPNLNHANLTKMAQQAIVHAENSYVQFLSDITKGSEKVVISLLDDTGSEELPKFNYIPNNIIYQNANVNISLARVADEGCCSDCLGNCLSLTFPCACSQETGGEFAYTREGLLKEKFLEACIAMKIKPQPYHFVYCQECPIYKGSEHMPEECKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTQEGKGWGIRTLEDLPKGCFVCEYVGEILTNAELYERVLHKSSKDRHTYPVTLDADWGSERVLKDDEALCLDATYNGNIARFINHRCFDANLIDIPVEVEIPDRHYYHIALFTNRKVKAYKELTWDYGIDFDDQEHPIKAFQCCCGSTFCRDKKKKGTGMKAKKQR* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1942 803 SMART set_7 631 771 IPR001214 GO:0005515
Amo19g1942 803 Gene3D SET domain 452 777 IPR046341 -
Amo19g1942 803 CDD SET_SETDB-like 498 765 - -
Amo19g1942 803 SMART preset_2 474 615 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo19g1942 803 ProSiteProfiles Pre-SET domain profile. 526 628 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo19g1942 803 Pfam Pre-SET motif 477 623 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo19g1942 803 SUPERFAMILY SET domain 485 788 IPR046341 -
Amo19g1942 803 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 131 798 - -
Amo19g1942 803 Gene3D - 126 189 IPR043017 -
Amo19g1942 803 ProSiteProfiles SET domain profile. 631 765 IPR001214 GO:0005515
Amo19g1942 803 Pfam Ubiquitin-binding WIYLD domain 136 189 IPR018848 GO:0018024
Amo19g1942 803 Pfam SET domain 643 765 IPR001214 GO:0005515
Amo19g1942 803 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 108 803 IPR025776 -
Amo19g1942 803 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 131 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1942 Amo-Chr19 65280051 65299785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1942 607 788 C2H2 Transcription Factor Family AT2G23740 39.572 4.07e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo19g1942 Pre-SET 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1942 - - adu:107465821 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1942 19 65280051 65299785 Amo09g1384 09 42886666 42899835 hybridization
Amo19g1942 19 65280051 65299785 Amo16g1512 16 27747671 27755444 PCT
Amo19g1942 19 65280051 65299785 Amo06g0307 06 4466056 4473946 PCT