Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1937 ATGATGGATGGTGATGATGAGTTTATTCAAGCATCTAAAGGGAAGAATGTTGAAAGTTTCACATGTTCAGAAGTAGCACTACCACAGAACAAAAATTCTAAGAAGAAAAAGAGCAAGATAGAGAACAAGAGAAGGTTTAGTGATGAGCAAATTAGATGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAAGAAGAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAGTTACTATATGGTTTCAGAACAGAAGGGCAAGATCACTTTTCCTTTTAATGGTCCTTTATATAAAGCATATGTACTTGCCTCCTGAATTTGACAGATCACAAGTTTAG 345 0.371 MMDGDDEFIQASKGKNVESFTCSEVALPQNKNSKKKKSKIENKRRFSDEQIRCIFESESKLEPKKKIQLARDLGLQPRQVTIWFQNRRARSLFLLMVLYIKHMYLPPEFDRSQV* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1937 114 ProSiteProfiles 'Homeobox' domain profile. 55 90 IPR001356 GO:0003677
Amo19g1937 114 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Amo19g1937 114 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
Amo19g1937 114 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 8 91 - -
Amo19g1937 114 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 91 IPR045224 GO:0003700
Amo19g1937 114 Pfam Homeodomain 44 90 IPR001356 GO:0003677
Amo19g1937 114 Gene3D - 22 92 - -
Amo19g1937 114 SMART HOX_1 40 98 IPR001356 GO:0003677
Amo19g1937 114 CDD homeodomain 43 91 IPR001356 GO:0003677
Amo19g1937 114 SUPERFAMILY Homeodomain-like 31 90 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1937 Amo-Chr19 65099669 65103641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1937 31 90 Homeobox Transcription Factor Family AT2G46680 65.079 1.17e-21 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo19g1937 Homeodomain 3.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1937 K09338 - aip:107619340 216.468