Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo19g1937 | ATGATGGATGGTGATGATGAGTTTATTCAAGCATCTAAAGGGAAGAATGTTGAAAGTTTCACATGTTCAGAAGTAGCACTACCACAGAACAAAAATTCTAAGAAGAAAAAGAGCAAGATAGAGAACAAGAGAAGGTTTAGTGATGAGCAAATTAGATGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAAGAAGAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAGTTACTATATGGTTTCAGAACAGAAGGGCAAGATCACTTTTCCTTTTAATGGTCCTTTATATAAAGCATATGTACTTGCCTCCTGAATTTGACAGATCACAAGTTTAG | 345 | 0.371 | MMDGDDEFIQASKGKNVESFTCSEVALPQNKNSKKKKSKIENKRRFSDEQIRCIFESESKLEPKKKIQLARDLGLQPRQVTIWFQNRRARSLFLLMVLYIKHMYLPPEFDRSQV* | 115 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo19g1937 | 114 | ProSiteProfiles | 'Homeobox' domain profile. | 55 | 90 | IPR001356 | GO:0003677 | |
Amo19g1937 | 114 | PRINTS | Lambda-repressor HTH signature | 74 | 90 | IPR000047 | GO:0003677 | |
Amo19g1937 | 114 | PRINTS | Lambda-repressor HTH signature | 65 | 74 | IPR000047 | GO:0003677 | |
Amo19g1937 | 114 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 8 | 91 | - | - | |
Amo19g1937 | 114 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 8 | 91 | IPR045224 | GO:0003700 | |
Amo19g1937 | 114 | Pfam | Homeodomain | 44 | 90 | IPR001356 | GO:0003677 | |
Amo19g1937 | 114 | Gene3D | - | 22 | 92 | - | - | |
Amo19g1937 | 114 | SMART | HOX_1 | 40 | 98 | IPR001356 | GO:0003677 | |
Amo19g1937 | 114 | CDD | homeodomain | 43 | 91 | IPR001356 | GO:0003677 | |
Amo19g1937 | 114 | SUPERFAMILY | Homeodomain-like | 31 | 90 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo19g1937 | Amo-Chr19 | 65099669 | 65103641 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo19g1937 | 31 | 90 | Homeobox Transcription Factor Family | AT2G46680 | 65.079 | 1.17e-21 | 84.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-other | Amo19g1937 | Homeodomain | 3.9e-12 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo19g1937 | K09338 | - | aip:107619340 | 216.468 |