Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1936 ATGTCTTCATCTTTTCCTGTTCTTCCTACATCTGCAGCGCAGGCTTCATCAATAAATTCCAACATCAGAAGTGTTGGTCATATGTTCTCAACCCCTGCTGATTTCCCTGATGATGGCGTGCCATTTCCCACCGCTTCCGAAATCCATTCAACAACACAAGCTTCTCAGCCGCTGCGACAAATTGATGATGTTTCCTGGGGAGCGGATCTGTTCGACAATATTCTTTTGTTTCCTGATAATAACAACGCTCCTTTCCAGAATGATCATACAGTGTATAGTGCTCCATTCTCATCCAGTGATAATCCAAAGGCTGTTGATTTTGAGTGGGTTGATCCCTTCATGTCTGATGATGATCCTCTTCAGCTAAATTGGAACCAGTTTGTCAGTGATACCAATGTAGCAGAGCCAAAACCAAAGGAAAGTCAGTTATCAATACAGCAGCAAGTGCCATCTGTTGAAGCTAACGGTCTTCCAGACTCTGTCTCAACCGCACCCCAAACTAAGCAAAGAATGCGTTGGACTCCGGAGCTTCATGAGGCCTTTGTGGAGGCAGTGAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAAGGAGTCTTGAACCTAATGAAAGTTGAAGGCCTTACCATATATCATGTGAAAAGCCACCTTCAGAAATATAGAACTGCCCGATACAAACCTGAGCCATCAGAAGGAGCTCCTGAGAAAAAGTTGATGGATTCAATTGAAGAAATGAATCCTCTAGACTTAAAAACGAGTAAGGGGATAACTGAAGCATTGAGATTGCAGATGGAACTTCAAAAGCGGCTTCATGAACAACTTGAGATACAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAGCGTCTTCAGATGATGTTTGAAAAACAGATAGAGGGCTCGTCCTCTGCTCCAATATCAAGCACGGGGCAACATACAAATGAAAATTCAGAACCCCAGAACGACGACAATGATAAACAGGAACAGGGAGACGAGCAGTTGGTTGCGCCTCCCCCAAAACGGGTTAAAAGTTTATGA 1041 0.4371 MSSSFPVLPTSAAQASSINSNIRSVGHMFSTPADFPDDGVPFPTASEIHSTTQASQPLRQIDDVSWGADLFDNILLFPDNNNAPFQNDHTVYSAPFSSSDNPKAVDFEWVDPFMSDDDPLQLNWNQFVSDTNVAEPKPKESQLSIQQQVPSVEANGLPDSVSTAPQTKQRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGAPEKKLMDSIEEMNPLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQIEGSSSAPISSTGQHTNENSEPQNDDNDKQEQGDEQLVAPPPKRVKSL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1936 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 310 IPR044848 GO:0003700
Amo19g1936 346 SUPERFAMILY Homeodomain-like 166 222 IPR009057 -
Amo19g1936 346 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677
Amo19g1936 346 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 9 310 - -
Amo19g1936 346 MobiDBLite consensus disorder prediction 296 346 - -
Amo19g1936 346 MobiDBLite consensus disorder prediction 297 318 - -
Amo19g1936 346 Coils Coil 257 277 - -
Amo19g1936 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 225 IPR017930 -
Amo19g1936 346 Pfam MYB-CC type transfactor, LHEQLE motif 256 298 IPR025756 -
Amo19g1936 346 Gene3D - 167 226 - -
Amo19g1936 346 Pfam Myb-like DNA-binding domain 170 221 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1936 Amo-Chr19 64935321 64954280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1936 20 344 G2-like Transcription Factor Family AT4G28610 44.729 4.05e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo19g1936 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1936 - - aip:107618959 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1936 19 64935321 64954280 Amo19g1936 19 64935321 64954280 ECH