Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1915 ATGGCTGCATCGTCTTCCTCAGCATCGCAATCGCATTTCACCTATTCCAACGCCCCTACCTACTTCCCCGTTCCTTTCCACCTCCAGCAATCCGCCGCCACACCGGCGCATTACGCCGCTGCGGTTTATGATGCGGCTCCAGCCGTACAAATCCCTTCGCCTCCGGTCATCGGTCCTGTCTCTCCTGCTCCGGTTTCCGGCGTATACTCCTTACCGCAATATCCGTCGCAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCGCTGGAGAGCGTGAAGGCGGCGATTGCGAGCAGCGAGGCGGAGAACAAGGCGCAGGCGAAGAAGAAAGCAGTTCCTCGAAAAGCTGCTGGTCAAACATGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGACGATGTTCTTACCAAAGCATTTTCACGTTTCCCTTCCTTTAGCATGGCACGGGTTGTCAGAGATAAACGGACTGGGAAAACAAAGGGCTATGGTTTTGTAAGCTTTGCCAGTCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCGATAAAATTAAGCAAGAGTAAGTGGAAGGAGAGAACAGATTTCGAGGCCCTGGAAAAACAGAAGAGCCAAACTCACAAGAAACCGAAGCTTCCCAGGAAGGGTGTTCTTCACAAGTGA 738 0.5122 MAASSSSASQSHFTYSNAPTYFPVPFHLQQSAATPAHYAAAVYDAAPAVQIPSPPVIGPVSPAPVSGVYSLPQYPSQQLFERDAQIITPEALESVKAAIASSEAENKAQAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFSMARVVRDKRTGKTKGYGFVSFASPSDLAAALKEMNGKYVGNRPIKLSKSKWKERTDFEALEKQKSQTHKKPKLPRKGVLHK* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1915 245 SUPERFAMILY RNA-binding domain, RBD 121 217 IPR035979 GO:0003676
Amo19g1915 245 Gene3D - 85 234 IPR012677 -
Amo19g1915 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Amo19g1915 245 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 34 245 - -
Amo19g1915 245 MobiDBLite consensus disorder prediction 221 245 - -
Amo19g1915 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Amo19g1915 245 SMART rrm1_1 138 211 IPR000504 GO:0003723
Amo19g1915 245 PANTHER RNA-BINDING PROTEIN 42-LIKE 34 245 - -
Amo19g1915 245 CDD RRM_RBM42 131 213 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1915 Amo-Chr19 62475049 62479758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1915 139 222 Eukaryotic Initiation Factors Gene Family AT2G23350 32.143 1.10e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1915 K25079 - gmx:100807693 367.081