Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1902 ATGAGAAGGGGAAAGATAGAGATAAAGAGGATAGAAAACACGACGACGAGGCAAGTGACGTTCTCAAAGAGAAGGAACGGACTCTTGAAGAAGACCAATGAGCTCTCTGTCCTCTGTGACGCCCAGATAGGACTCATCGCCTTCTCCAACACTGGCAAGCTCTTTCACTACTCCTCTCACCCCTACAGGACTCACATAATGCGCCATGGACATGCCCATGATCAGGAAGATTTATTGATTGAGATGGCAATGCTGAGGCATCAAAATCTGAGCCTTGAGATGGGGATTCAGCGCTACCTTGGAGAAGGCATAGCTTTTCTCCAATACGAAGAATTGACTAAGCTTGAAGGAGAACTTCAAAGCTCTGTTGCAAGGGTTCGAAAGCGTCAGGAAAAAGATTCTATGCTCATCGAATTTGTTTAG 423 0.4586 MRRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIAFSNTGKLFHYSSHPYRTHIMRHGHAHDQEDLLIEMAMLRHQNLSLEMGIQRYLGEGIAFLQYEELTKLEGELQSSVARVRKRQEKDSMLIEFV* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1902 140 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 131 IPR031050 GO:0005634|GO:0048316
Amo19g1902 140 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo19g1902 140 Pfam K-box region 71 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo19g1902 140 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo19g1902 140 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Amo19g1902 140 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo19g1902 140 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Amo19g1902 140 ProSiteProfiles K-box domain profile. 75 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo19g1902 140 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Amo19g1902 140 PANTHER MADS BOX PROTEIN 1 131 - -
Amo19g1902 140 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo19g1902 140 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo19g1902 140 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1902 Amo-Chr19 60332728 60336864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1902 1 130 MADS-box Gene Family AT5G23260 49.645 4.41e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo19g1902 K-box 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1902 - - ahf:112758495 250.366