Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1898 ATGGAAGAGTTCCGAGCAGCTAGTCAAAAACTTGGTGATGGCGTGGGTGTAAAGTCTTTAATGCAAAGCACGGGACTTGGAATAATTGTTGGCCAGTTAACTGCCAAAAGAGGAAAAGGAATGCTGGATGTGGAAGAGACCCCCACCACCAAGCAAGAAAATGGATGCTATAAGTTATTACTATGTATGAGATTCTTAAAGTTTGCTTGCCTCTTGTGTCGCAAGGTGTTGAGCGTCCCTGTGACAACTCCTTGTGGCCATAACTTCTGCAAATCCTGTTTGGAGGGTGCCTTTTCTGGCAAAAGCTTTATCAAAAAGAGGGGAAGCGAAGGTGGGCGCACCTTGCGAGCATAG 354 0.4605 MEEFRAASQKLGDGVGVKSLMQSTGLGIIVGQLTAKRGKGMLDVEETPTTKQENGCYKLLLCMRFLKFACLLCRKVLSVPVTTPCGHNFCKSCLEGAFSGKSFIKKRGSEGGRTLRA* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1898 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 109 IPR013083 -
Amo19g1898 117 ProSiteProfiles Zinc finger RING-type profile. 70 94 IPR001841 -
Amo19g1898 117 SUPERFAMILY RING/U-box 67 101 - -
Amo19g1898 117 ProSitePatterns Zinc finger RING-type signature. 85 94 IPR017907 -
Amo19g1898 117 Pfam RING-type zinc-finger 70 100 IPR027370 -
Amo19g1898 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 65 117 IPR045134 -
Amo19g1898 117 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 65 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1898 Amo-Chr19 60117661 60119181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1898 48 117 C2H2 Transcription Factor Family AT5G39550 52.113 1.47e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1898 K10638 - csin:114257847 88.1965