Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1883 ATGTTTTCTGAAGTTGCTTTGAACCTTGATATGTGTAGGAAAATATTGAAAATGAGCGGGAACAAGGATGAAATAAAGCAAGCAAGAGGAACACTCAAGAGTGGTGTGGGATTTGGTGATTGGGAAAGTAATGGTGTGGATGAGTTAGGTAGTAGTTGTTGTGTTGATGTTGGGCATGCCGCCACCTGTAGCAGCGTCTGTCCCCACCACTGCCGCACCTCTCTCTCTCCTTTTATCCCCACTCAGTTCTGGCTCGCATATCTTCTCAGCGCCGCAGCCATCATCTCCTCCAGTCAATGCTTCCAGGTTGTTGGTATTGAAGGGCATAATCCTAGTGGGCATTGCTTAGTTGCATCTAAATTGGTAGATTCTATACCACCTACCTCTGTTGCTGATGATAAGGATTTGAATCCAGCAAAGAAGCTAGCTATTGATAAAAGTCAACCAATTGATATTACTTCTAAAAAGACAGAGTTGCCCATGATTATTGCAGCAGGCCCTTTTACAACAATAGACAATTTATTTTTTGAGCCCCTTGTAGAATTTAGTGGCGAGATACCGAATTCTTTAGGAGGCCTCAAGAACCTGAATTATTTAGACCTCTCCTACAATAATCTGAGTGGTTCCTTGCCAAGAATACCAGCAAGAACATTAAAGGTGATAGTCGTCTACAGAGATCAGAGGATCATTGGTGCAAACTGCAAAGTGATAGATGGCGAGGTTGATATATGGGAGCAAAGGATAGTGTTTGGATCTCGGGCAAAGAACCTTAAAGATCTAATGCTTGCAGAAGAAGCACCTACACCATTGCAATTCAGCAAAAAGAGATCACGCTCTGAGATGAGTAAATCCAAGTCTGCTATTCAACACATGAAAAATATGGAAAGCGATGTTGACATTGCGTGCTCTATTGCAAAGGATCCTAAGCGAAAGCCTTTGTCAAAGGAGTTACAGAAGGAAGAGAATACCTTGAAACAGTGCGTAGAGAAGCTTAAATTAGTTGAAGCAAATAGAGTTGTACTTGTCTCTCATTTAAAAGAAGCTTTGCATGAGCAGATTCTAATCATGAAATTTCCAAGTTATTGCAGAGAGCAGGCTTCTAGTACATCTAGCAAAGCAGTGTCTGGTGACATGTCCAGTGATGAAAAAAAATCAGTGTCATCGTCTTCATTAATGGTGCGAATGGAGCAAGTCAGAAGAGAACGAGCCACCAATGATGGCAGCATGCGTTCAAGTCTGCTACCCATCTCACTGTGTTGCTTTGGAAGCTTAGATGCAATCTCATAA 1287 0.4196 MFSEVALNLDMCRKILKMSGNKDEIKQARGTLKSGVGFGDWESNGVDELGSSCCVDVGHAATCSSVCPHHCRTSLSPFIPTQFWLAYLLSAAAIISSSQCFQVVGIEGHNPSGHCLVASKLVDSIPPTSVADDKDLNPAKKLAIDKSQPIDITSKKTELPMIIAAGPFTTIDNLFFEPLVEFSGEIPNSLGGLKNLNYLDLSYNNLSGSLPRIPARTLKVIVVYRDQRIIGANCKVIDGEVDIWEQRIVFGSRAKNLKDLMLAEEAPTPLQFSKKRSRSEMSKSKSAIQHMKNMESDVDIACSIAKDPKRKPLSKELQKEENTLKQCVEKLKLVEANRVVLVSHLKEALHEQILIMKFPSYCREQASSTSSKAVSGDMSSDEKKSVSSSSLMVRMEQVRRERATNDGSMRSSLLPISLCCFGSLDAIS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1883 428 PANTHER ENTH/VHS FAMILY PROTEIN 234 279 - -
Amo19g1883 428 PANTHER ENTH/VHS FAMILY PROTEIN 280 352 - -
Amo19g1883 428 SUPERFAMILY L domain-like 182 212 - -
Amo19g1883 428 MobiDBLite consensus disorder prediction 369 394 - -
Amo19g1883 428 Coils Coil 317 337 - -
Amo19g1883 428 Gene3D Ribonuclease Inhibitor 171 220 IPR032675 -
Amo19g1883 428 ProSiteProfiles Leucine-rich repeat profile. 195 217 IPR001611 GO:0005515
Amo19g1883 428 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 234 279 - -
Amo19g1883 428 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 280 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1883 Amo-Chr19 59268740 59276260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1883 102 182 Core DNA Replication Machinery Family AT1G67630 56.627 5.93e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1883 K15559 - aip:107648605 203.371