Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1876 AGTGAGAGGGGGTCACTGCCGCAACGTCGCTGCAGCCGCCGCCATTGCCGTCGCGGAGCAGGGAGCCCGGAGGGGAGAGAGAGACAATTTGCAGACGAGATGGAGAGAGAGGATGAAGATGCGACGCAAGAGAGGAGGCTGTTCCGCCATGCACTGTCATCGCTCCTGGGGTCGATTGAAGCCGCCGCCGCAGCTAGGGCTTGCCGTGCTCCTGTTCGGAACAATGTTGATCGATTCCTGAATTGGAGCACTAGGTTCCAAATTGTTCTAGGCGTGGCAAGGGAATTACAGTACTTTCATGAGGATTCACATCTAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATCATAAGTTTTATACCAAGATTGGAGACTTTGGCCTTGCCAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAATTCGCTGGAACATTCGCCAAAAGGGCTGTTTTCGCCGGAGCCAGAACATTATCAAGGACCAAAGCTGAAAGTTTCCATCATTGGAGCTGGGCTTTCTGGCATGTCAACTACAGTGGAACTCTTGAATCAAGGACACGAGTCCCAGAAGAATACACAGGTGTTGCAGAAACTGATTTTCTGGAGCAAAATTTGGTGGCTCACCCAGCACCACCAGCGTCTACTGTCTTTGCCGCCGCTCCTCTGTTTCACAAATTCCTTTTCTTTGATTCTGCCTGCTGCTCTTCTGTCCTGGGCTGTTATTTCCAACAAGGTATGGAGGTTAAGATGGAAATGAAGGTGGAAGATGCATATAGGAAGTCAATGGAGACAGTGTTGAATTGGATACAAGATACTGTAAATCTTAACAAGAGTCAAGTTTTCTTTCGTATATATGCACCCGTGCACTTCAGAAGTGGAGATTGGAGAAGCTATGGAAGTTGTCATTTGGAAACACTGCCAGAGCTTAACATGTCATTGGTGCCTAATGATAACTGGTCACAATTCAAAATAGGCAATTCATTGCTATCATCACACAAAAACAACACTGAACTTGTCAAGTTGAAAATATTGAATATAACAGAGATGACAGCTCAGAGAAAAGATGGACACTCATCAATCTACTATCTTGGTCCGAATGGCGGCACGGCAGCACTCCATCGGCAAGATTGCAGCCACTGGTGTCTGTTGGTGTACCTGATACATGGAATGAGCTGCTTTATGCAATGTTCATGA 1209 0.4673 SERGSLPQRRCSRRHCRRGAGSPEGRERQFADEMEREDEDATQERRLFRHALSSLLGSIEAAAAARACRAPVRNNVDRFLNWSTRFQIVLGVARELQYFHEDSHLRIVHRDIKASNILLDHKFYTKIGDFGLARFFPEDQAYLSTQFAGTFAKRAVFAGARTLSRTKAESFHHWSWAFWHVNYSGTLESRTRVPEEYTGVAETDFLEQNLVAHPAPPASTVFAAAPLFHKFLFFDSACCSSVLGCYFQQGMEVKMEMKVEDAYRKSMETVLNWIQDTVNLNKSQVFFRIYAPVHFRSGDWRSYGSCHLETLPELNMSLVPNDNWSQFKIGNSLLSSHKNNTELVKLKILNITEMTAQRKDGHSSIYYLGPNGGTAALHRQDCSHWCLLVYLIHGMSCFMQCS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1876 402 Gene3D Transferase(Phosphotransferase) domain 1 70 168 - -
Amo19g1876 402 SUPERFAMILY Protein kinase-like (PK-like) 78 151 IPR011009 -
Amo19g1876 402 MobiDBLite consensus disorder prediction 1 40 - -
Amo19g1876 402 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 10 243 387 - -
Amo19g1876 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
Amo19g1876 402 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 240 387 IPR026057 GO:0016740
Amo19g1876 402 Pfam Protein kinase domain 87 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1876 402 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 243 387 IPR029962 GO:0016413
Amo19g1876 402 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g1876 402 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1876 Amo-Chr19 58753709 58757628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1876 80 151 Receptor kinase-like Gene Family AT1G70530 59.722 1.36e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo19g1876 PC-Esterase 7.7e-33 CL0264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1876 - - aip:107647562 561.607