Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1871 ATGAGGACCCGAAATGCTGATTCCTCTTCCAAATCCACAACCCCGAAGAAGGCACCGCCGGCGAGAAAAACCGCCGCAAAATCCGCCGGAGAATCCCCTGCAGCAAAGCGCAATTCCACCGTCAAAACAAGGCAGATCAAGAAGAAGGAGGCCTCTCCCGCTTCCAACTCGATTCCCGATTCCAATCCCGATGAGCCGAATTCAGATGAGGTTGTTACCACTACACCGTGTTCAAAGAGGAAGCCAGGGAGACCAAGAACTAAAGCAGTTGCCACACCTAAGCTGGAGGAAGAACTGAAGGCAGTGGCTGATGAAACTCTAGTTGTGGATAACTCTGGGGATGTGGAGGAAGCGGAAAAGCCTCAAAATGTTGAAGTTGTCGATGCTGATAATATCGATCACGAGAAAGAGGGGCACCTGGAACAAGTTGTTGAATGTGTTGGACAATCTGAAGAGAAGGAACAAAAGTCTATGGAAGTGGATGAAACTGTGAAGGGAAACAATGCAGTGGAGGCTGAAGCGACTGCTTCTCAGGATGCCACTATGTCTTCCAAACAACCTGAGCGAACTCTTGTGGACCTAAATATATCGGTGAATGAAGATGATTCTATGTGTCAAAAGGAGGGAGAGAAAGAAGATGAAGAGTTGAATGAAAGGGACGGTCGGGAAGAGTTGAAGGATCAGGAACAAGAGAAAGGAGATGTAGAGTTGAAAGAACAAGAGGGAGAGAAAGGAGGGGAGGAGCTGAAGGAACAGGAGGCAGTGAATGTAAAGGAAGAACTGAAAGAAGAGGACGGAGATAAAGGAAAGGAAGAAGTCAAAGATGACGAAGGAGAAACAGCAAAGGAAGAAACAAAGGAAGAGGAAACAAACATTACTGGACACAAAGAATGCTCTAATACTGATAGTGCAGTAATGAAAGACCAGTCGAAGGAAGATTTTAATACTAGAAAAGTTGGTGATGAAGTGACAGAGAGCAGTGAAAGGCTGGATTTTGAAGAACATGGTGGGGAGGATATTGAGGAAGATCCAGAGGAAGGTCCATGGGAACCTCCTGAAGAAAATGAGGCGCTCCAAGAGGAGCATACGGAATTGGAGGCCATTGCAAACCAGCGAAAGAGTAACAAAGAACATGAGATATTTGTTGGAGGGCTTGACCGTGATGCTACAGAGGAAGATCTGAGAAAAGTTTTTAAGAGGATTGGGGAGGTAGTTGATGTCAGGTTGCATAAGAATTCATCAACAAATAAAAATAAGGGCTATGCATTTGTGAGGTTTGCTAATAAGGAACATGCTAAGAGAGCATTGTCAGAAATGAAGAACCCAGTTATACGTGGTAAAAGATGTGGGACTGCACCCAGCGAGGATAACAACACATTATTCTTGGGAAATATTTGCAATACGTGGACGAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTATTGATGGGGTTGAAAACATTACGCTTGTGCTAGATGCTAAATGTGAAGGATTGAGCCGTGGCTTTGCATTCCTTGAGTTTTCTAGTCATGGTGATGCAATGCTTGCGTACAAGAGGCTTCAAAAGCCTGACGCGATCTTTGGGCATCCTGAGAGAAGTGCCAAGGTAGCCTTTGCTGAGCCTATGCGTGAACCAGACCCAGAGATAATGGCACAGGTTAAATCTGTGTTTATTAATGGTCTTCCTCCTCACTGGGAAGAAGATCACATCAGGGAGATGCTTAAATCTTATGGTGAAATTGTAAGAATTGTACTAGCAAGGAATATATCTACAGCCAAGAGGAAGGATTATGGATTTGTTGATTTCTCAACACATGAAGCTGCTGTTGCATGTGTTGAAGCTGTAAATAAGTCTGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGGCTATCAAATCCGGTGCCTAAAACACAAGCTGTAAAAGGTGGCATTTGTGGTGGGTTCCGAATAGGTCATGGAAGGAGTGGAGCCTTTGCAAGATCTGGAAGGGGTTATGGGCGGGGAAGGCAGCCCTTCAACAGCTGGGGAAATATTAACAGGGGTAGGGGTGTCTATCATGGTGGACCCAGGCAAATAGGGAGAATGGATTTCCGGGATGACCTTGACTTTAATATGTATCCAGATTACCATCATAGGCAATTTGGTCCTGAAGGAGCTATGAGGGGTGGACATTACCCAAGTAACAGAGGTGCTGCATTTGCTGGTCCTGGTCCACCTAGACCTTATCATGATAGAGCATGGGGTAACATCCCTGCAGAAGGCCCGAGTGAGCCTTTTCCTTTAAGGAGGCCATATTCCCCAGGCGGACAGTTCAACAGGCCATTTTCACCGGGTGGACAGTTCAACAGGCCATTTATGGGAAGGCATTTTGATGATCCGTATTTTTATGATGACAATGTGCATGGGATGAAACGCCCATTTTATATGACTGACCCTGAACCTGATTATATGGGAGCTAATAGACTTCGCCCACGATTGGATTATGCAGATCCATCTTTATTTCACGAAAACCGTCACAATGATTCTTATGGAGCTGGCAGCAGACAGTACCCTCCTGATTATTATGGTTCTGATGTGGATCTTGATTGTGAGATGGACATCTTCAACTCTGAGGATGCAGCTTGA 2640 0.4504 MRTRNADSSSKSTTPKKAPPARKTAAKSAGESPAAKRNSTVKTRQIKKKEASPASNSIPDSNPDEPNSDEVVTTTPCSKRKPGRPRTKAVATPKLEEELKAVADETLVVDNSGDVEEAEKPQNVEVVDADNIDHEKEGHLEQVVECVGQSEEKEQKSMEVDETVKGNNAVEAEATASQDATMSSKQPERTLVDLNISVNEDDSMCQKEGEKEDEELNERDGREELKDQEQEKGDVELKEQEGEKGGEELKEQEAVNVKEELKEEDGDKGKEEVKDDEGETAKEETKEEETNITGHKECSNTDSAVMKDQSKEDFNTRKVGDEVTESSERLDFEEHGGEDIEEDPEEGPWEPPEENEALQEEHTELEAIANQRKSNKEHEIFVGGLDRDATEEDLRKVFKRIGEVVDVRLHKNSSTNKNKGYAFVRFANKEHAKRALSEMKNPVIRGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVLDAKCEGLSRGFAFLEFSSHGDAMLAYKRLQKPDAIFGHPERSAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWEEDHIREMLKSYGEIVRIVLARNISTAKRKDYGFVDFSTHEAAVACVEAVNKSELGDGASKIKVRARLSNPVPKTQAVKGGICGGFRIGHGRSGAFARSGRGYGRGRQPFNSWGNINRGRGVYHGGPRQIGRMDFRDDLDFNMYPDYHHRQFGPEGAMRGGHYPSNRGAAFAGPGPPRPYHDRAWGNIPAEGPSEPFPLRRPYSPGGQFNRPFSPGGQFNRPFMGRHFDDPYFYDDNVHGMKRPFYMTDPEPDYMGANRLRPRLDYADPSLFHENRHNDSYGAGSRQYPPDYYGSDVDLDCEMDIFNSEDAA* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1871 879 MobiDBLite consensus disorder prediction 149 360 - -
Amo19g1871 879 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 456 IPR000504 GO:0003723
Amo19g1871 879 SMART rrm1_1 379 452 IPR000504 GO:0003723
Amo19g1871 879 SMART rrm1_1 459 536 IPR000504 GO:0003723
Amo19g1871 879 SMART rrm1_1 557 632 IPR000504 GO:0003723
Amo19g1871 879 MobiDBLite consensus disorder prediction 170 202 - -
Amo19g1871 879 Coils Coil 355 375 - -
Amo19g1871 879 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 460 524 IPR000504 GO:0003723
Amo19g1871 879 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 558 624 IPR000504 GO:0003723
Amo19g1871 879 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 448 IPR000504 GO:0003723
Amo19g1871 879 Coils Coil 211 231 - -
Amo19g1871 879 MobiDBLite consensus disorder prediction 335 354 - -
Amo19g1871 879 MobiDBLite consensus disorder prediction 306 334 - -
Amo19g1871 879 MobiDBLite consensus disorder prediction 1 97 - -
Amo19g1871 879 MobiDBLite consensus disorder prediction 50 75 - -
Amo19g1871 879 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 357 853 - -
Amo19g1871 879 PANTHER NUCLEOLIN-LIKE ISOFORM X1 357 853 - -
Amo19g1871 879 CDD RRM_SF 558 632 - -
Amo19g1871 879 CDD RRM_SF 460 523 - -
Amo19g1871 879 SUPERFAMILY RNA-binding domain, RBD 546 661 IPR035979 GO:0003676
Amo19g1871 879 CDD RRM_SF 380 448 - -
Amo19g1871 879 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 556 636 IPR000504 GO:0003723
Amo19g1871 879 MobiDBLite consensus disorder prediction 203 295 - -
Amo19g1871 879 Gene3D - 543 694 IPR012677 -
Amo19g1871 879 Gene3D - 350 456 IPR012677 -
Amo19g1871 879 MobiDBLite consensus disorder prediction 725 745 - -
Amo19g1871 879 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 458 543 IPR000504 GO:0003723
Amo19g1871 879 Gene3D - 457 542 IPR012677 -
Amo19g1871 879 SUPERFAMILY RNA-binding domain, RBD 379 523 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1871 Amo-Chr19 58519159 58524136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1871 367 624 Eukaryotic Initiation Factors Gene Family AT1G22760 26.937 1.93e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1871 - - aip:107627051 1110.13