Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1865 ATGCAAAAAAGAAGGTTGTTACTTGTTAGTGGATTAGCAACTTATTTGGAAGGGTGGGACTGTTTCGGCTATGACATTAGATATGAGAATACTTCTTGGGGATTCGCAATTGGATTCAAGTTGGATAGTCTTTTAAAGCTTACTGACACTTGTGCTTCTAACAATAAGATGACACTGATGCACTATCTTTGCAAGTTGGGAGCTCCTGAGATTGTTCCAGATTATCCAATTCTTTCTGTTGACGACCTAGCAGATCAAATAGCCGAGGTTCTCAACTTTTTTGGTCTTAGTGCAGTAATGTGCATAGGACTAGCTACCGGGGCTTACATTCTTACCTTATTTGCTTTAGCTTATAACTTCTCACTGCTCCAGCTCTTCCGTGGTGACACTATCCTCATCAAGGGCAAGAAAATGAGGGATACTGTTTGCATAGCTCTTGTTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTGTGGAGTTTAAGGATGAAGAGAGGCTGGATAAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTCTGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGCTACCAATCGCCCAAACAGCATTGACCCAGCATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCTTGATGAAGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTTGTTCATTAA 1242 0.4259 MQKRRLLLVSGLATYLEGWDCFGYDIRYENTSWGFAIGFKLDSLLKLTDTCASNNKMTLMHYLCKLGAPEIVPDYPILSVDDLADQIAEVLNFFGLSAVMCIGLATGAYILTLFALAYNFSLLQLFRGDTILIKGKKMRDTVCIALVDDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKDEERLDKVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHATNRPNSIDPALRRFGRFDREIDIGVLDEVGRLEVLRIHTKNMKLSDDVVH* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1865 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 411 IPR027417 -
Amo19g1865 413 SMART CDC48_N_2 99 182 IPR003338 -
Amo19g1865 413 PANTHER AAA-FAMILY ATPASE 119 238 - -
Amo19g1865 413 PANTHER AAA-FAMILY ATPASE 239 363 - -
Amo19g1865 413 Pfam Cell division protein 48 (CDC48), N-terminal domain 120 180 IPR003338 -
Amo19g1865 413 SUPERFAMILY ADC-like 122 179 IPR009010 -
Amo19g1865 413 Gene3D - 246 362 IPR027417 -
Amo19g1865 413 Gene3D - 363 388 IPR027417 -
Amo19g1865 413 Gene3D - 389 411 - -
Amo19g1865 413 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 119 238 - -
Amo19g1865 413 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 363 411 - -
Amo19g1865 413 PANTHER AAA-FAMILY ATPASE 363 411 - -
Amo19g1865 413 Gene3D Formin, FH2 domain 27 96 IPR042201 -
Amo19g1865 413 Pfam Ndr family 66 119 IPR004142 -
Amo19g1865 413 Gene3D - 118 181 - -
Amo19g1865 413 Gene3D - 182 245 - -
Amo19g1865 413 SUPERFAMILY Formin homology 2 domain (FH2 domain) 30 66 - -
Amo19g1865 413 SUPERFAMILY Cdc48 domain 2-like 181 238 IPR029067 -
Amo19g1865 413 Pfam ATPase family associated with various cellular activities (AAA) 286 359 IPR003959 GO:0005524|GO:0016887
Amo19g1865 413 SUPERFAMILY alpha/beta-Hydrolases 56 120 IPR029058 -
Amo19g1865 413 CDD AAA 252 387 - -
Amo19g1865 413 Pfam Formin Homology 2 Domain 34 66 IPR015425 -
Amo19g1865 413 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 239 363 - -
Amo19g1865 413 SMART AAA_5 282 390 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1865 Amo-Chr19 58230094 58235342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1865 245 411 Calmodulin-binding Proteins AT3G56690 43.147 5.67e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1865 K13525 - aip:107621123 660.218