Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1850 ATGGAGCAAGCGGTTGTGGACGACATAATAAACCGATTGCTGGAAGTTCGGGGGAGGCCGGGGAAGCAGGTGCAGCTCTCGGAATCGGAGATCAAGCAGCTGTGTGCCGCTTCCAGAGAGATTTTCTTGCAGCAGCCCAATTTGTTGGAGCTTGAAGCCCCCATTAAGATTTGCGGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCACCTGAGGCCAACTACTTGTTTTTGGGTGATTATGTAGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTTCTCCTTGCTTATAAGATAAAATATCCTGAGAACTTTTTCCTTTTGAGGGGGAATCATGAATGTGCTTCTATAAACCGTATATATGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGGTTATGGAGGACATTTACAGAATGCTTCAATTGCCTGCCTGTGGCAGCTCTCATTGATGAAAAAATTTTGTGCATGCATGGGGGACTTTCTCCTGACTTAAACAATTTGGATCAGATTAGAAATCTTCAGCGGCCAACTGATGTACCAGATACGGGTTTGCTATGCGATCTCCTATGGTCAGATCCAAGCAAAGAAGTTCAAGGTTGGGGAATGAATGATAGGGGAGTTTCATATACATTTGGTGCAGATAAGGTCTCCGAGTTTCTTCAGAAACATGATTTGGATCTTATTTGTCGTGCTCATCAGGTGGTGGAGGATGGATATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCAGCACCCAATTATTGCGGGGAATTTGACAATGCTGGCGCTATGATGAGTGTTGATGAAACTCTAATGTGCTCTTTCCAAATATTAAAGCCTGCTGATAGAAAAGGAAAGCTCAATTTCGGAAGTACAACGACTGCTAAGCCAGGAAACTCTCCAGCTGGTGTGAAGTCCTTCCTAGGTACAAAAGTATGA 981 0.4261 MEQAVVDDIINRLLEVRGRPGKQVQLSESEIKQLCAASREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWRTFTECFNCLPVAALIDEKILCMHGGLSPDLNNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADRKGKLNFGSTTTAKPGNSPAGVKSFLGTKV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1850 326 SUPERFAMILY Metallo-dependent phosphatases 17 297 IPR029052 -
Amo19g1850 326 Gene3D - 1 305 IPR029052 -
Amo19g1850 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
Amo19g1850 326 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 320 - -
Amo19g1850 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Amo19g1850 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Amo19g1850 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Amo19g1850 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Amo19g1850 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Amo19g1850 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Amo19g1850 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Amo19g1850 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Amo19g1850 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Amo19g1850 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Amo19g1850 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Amo19g1850 326 CDD MPP_PP1_PPKL 5 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1850 Amo-Chr19 56789224 56794365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1850 55 239 Calmodulin-binding Proteins AT5G63870 32.727 2.66e-28 109