Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1800 CTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAAAAGTTAAATTTGAAGAATGAGGATGAAATGGTAGCTGAAAATGAGAAAAAAGATTCGGACTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCGGAAACAGTTGAAGTCGAATGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAACAGTGGTAGAGTTCAACAGCAATATCTACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAATTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGCTAAATAGTCACTGGCTTGCCCTTTACCTCCAAACATTGCTTCAGTGCATCAATGGAATCTCTGTTAAATCACAATGGTGA 453 0.4084 LSENLGLQDETRDELGAEFHKKLNLKNEDEMVAENEKKDSDFVAGSGEYGGEELGGEGGCAPETVEVECDEEVEKKKDRNSGRVQQQYLLRPDAEDCAFYLKTGICKFGFNCKFNHPLGRRKNQLNSHWLALYLQTLLQCINGISVKSQW* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1800 150 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 36 124 - -
Amo19g1800 150 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 117 IPR000571 GO:0046872
Amo19g1800 150 SUPERFAMILY CCCH zinc finger 93 120 IPR036855 GO:0046872
Amo19g1800 150 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Amo19g1800 150 MobiDBLite consensus disorder prediction 34 58 - -
Amo19g1800 150 PANTHER PROTEIN PHOSPHATASE RELATED 36 124 - -
Amo19g1800 150 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Amo19g1800 150 Gene3D - 61 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1800 Amo-Chr19 52637456 52638236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1800 88 120 C2H2 Transcription Factor Family AT1G29570 51.515 3.43e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo19g1800 zf-CCCH 1.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1800 - - aip:110269499 115.546