Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1781 ATGGCCTCTCTTGGAAGTAGTCCAGGTGGTGGCAACAAGAAAAGGAAGCGATCATCATCCAACAATGGTGACAATAATGGCAGCTGCTGTAACTGCCGAAGGATTCAATGCATGAACCTCTTCTGTGTATGCCTTCGTGCCGGAGACTTTTGCAACGATTCTTGTTCTTGCAACTGGTGCTTGAATATTTGGGAGAATAAGGATTTTGTGGACGAGAAGAAAAAGGAAATCGAATTGCGTGATCCACACGCATTTCAACCCAAAATTATTTTTGGTGAGAACGAAACAGCAGCATGGCACAGAAAAGGTTGCAACTGCAGAAAGTCAAAGTGCAAGAGCAAGTATTGCGCTTGCTTCCGTGCTGAAGTTGGTTGTTCTAGTCGTTGTCGATGTGAGGGTTGCATGAATAAGTATGGAAATGGAATCATCAAAGATGAACAAGAACAATGTGTTTTGACTAATAATAATAATGGCGGCAATGACGTAACCGTGGATAATGAATCATCATCTTCTCAATCTCATCATCCAGTTGCCGACAATGATATTTTTGATCAGCTTTCTGAACTAGATGTGGATATGGTTATTAATGAGGAAGACGAGGCAGAGTGTTATCGACAGCAAATGTTACTGGCCGGATACGGCGAGAATGAAATCTACAACGATAATATGGATATGGCATCAAATCAAGTTAACCATGTTCCTGCTGCTGCTTCTTATTATAATTATAATGTTGCTGCACATAATTATCATCAGCCTCTAACCCCAGAACAGATTTTTCGGGTCGAAAACAACACTACTGAGGAACAGAATACTGACATATGCATGTTGCTTGATGATCCTGATTTGCAGGGACCATCACCTTTCAGCTTTTATGATAATAATATTGTTGATGAGTCCTCATCAGTTCATAATTTCTCGATGATGGAGCCAATAATTCAGAGTAGTATTCAGCGGTATAAACCTCAGAGTAAGAGTTATAGTGATCTTTTTCAACAAGAAGCATCATCATCAGGGGGAATGAATCATCGCCAGCATCCATCATTACTGATGAATGCACAACATCAGCGGCAGAATGATGCAACAAACATACAAGCTCATAGTTATTAA 1107 0.4029 MASLGSSPGGGNKKRKRSSSNNGDNNGSCCNCRRIQCMNLFCVCLRAGDFCNDSCSCNWCLNIWENKDFVDEKKKEIELRDPHAFQPKIIFGENETAAWHRKGCNCRKSKCKSKYCACFRAEVGCSSRCRCEGCMNKYGNGIIKDEQEQCVLTNNNNGGNDVTVDNESSSSQSHHPVADNDIFDQLSELDVDMVINEEDEAECYRQQMLLAGYGENEIYNDNMDMASNQVNHVPAAASYYNYNVAAHNYHQPLTPEQIFRVENNTTEEQNTDICMLLDDPDLQGPSPFSFYDNNIVDESSSVHNFSMMEPIIQSSIQRYKPQSKSYSDLFQQEASSSGGMNHRQHPSLLMNAQHQRQNDATNIQAHSY* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1781 368 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 12 275 - -
Amo19g1781 368 MobiDBLite consensus disorder prediction 1 25 - -
Amo19g1781 368 MobiDBLite consensus disorder prediction 323 344 - -
Amo19g1781 368 ProSiteProfiles CRC domain profile. 26 139 IPR005172 -
Amo19g1781 368 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 29 62 IPR005172 -
Amo19g1781 368 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 102 137 IPR005172 -
Amo19g1781 368 SMART CXC_2 99 140 IPR033467 -
Amo19g1781 368 SMART CXC_2 25 66 IPR033467 -
Amo19g1781 368 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 12 275 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1781 Amo-Chr19 51641212 51642970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1781 1 139 CPP Transcription Factor Family AT3G22760 42.763 1.31e-33 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo19g1781 TCR 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1781 K21776 - ahf:112771246 264.618