Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1770 ATGAGGTGGCGTAGCCGCCTCCGAAGTCCGAAGCTGAAGCACTGCAACTGCGCATCTCGGCAACTATTCGCCACTGGTCCTGTACTCTGCCGCCTTCATATTAGCTCAAATCCAAATCCAAATCCAATGGCTTCGGAGAAGAAACTTGCGAATCCAATGAGAGAGATTAAGGTGCAGAAGCTCGTTCTCAACATCTCCGTGGGTGAGAGTGGAGATCGTCTCACTAGAGCCGCTAAGGTGCTAGAGCAACTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGATACACTGTCCGTTCCTTTGGAATTAGAAGGAATGAGAAGATTGCATGCTATGTCACTGTTCGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGTTTGAAGGTTAAAGAATACGAACTTTTGAGGAGAAACTTTTCTGAGACTGGATGCTTTGGCTTTGGTATTCAGGAGCATATCGATTTGGGAATCAAGTATGATCCTTCCACTGGTATCTATGGTATGGACTTCTTCATTGTTTTGGAGCGACCAGGATACCGAGTTGGAAGGCGCAGGAGACAGAAGTCCCGTGTTGGAATTCAGCACAGGGTTACCAAAGAGGACGCTATGAAATGGTTCCAAGTGAAGTATGAGGGAGTTATTCTGAACAAGTCCCAACAAATCTCTTAA 672 0.4658 MRWRSRLRSPKLKHCNCASRQLFATGPVLCRLHISSNPNPNPMASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFFIVLERPGYRVGRRRRQKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1770 223 Gene3D - 43 219 IPR022803 -
Amo19g1770 223 ProSitePatterns Ribosomal protein L5 signature. 81 97 IPR020929 GO:0003735|GO:0005840|GO:0006412
Amo19g1770 223 SUPERFAMILY RL5-like 51 215 IPR022803 -
Amo19g1770 223 Pfam Ribosomal protein L5 51 104 IPR031310 -
Amo19g1770 223 Pfam ribosomal L5P family C-terminus 108 206 IPR031309 -
Amo19g1770 223 PANTHER 60S RIBOSOMAL PROTEIN L11-1 30 222 - -
Amo19g1770 223 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 30 222 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1770 Amo-Chr19 50636231 50638830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1770 43 223 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 92.818 1.48e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1770 K02868 - cit:102625025 329.331