Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1760 ATTTGTGATTTCGGGCTCGCAAAATGGTTACCAGAACAGTGGACTCACTGCAACGTAACGAAAATTGGAGGCACATTTGGGTATTTTGCACCTGAATATTGCATGCATGGCATAGTAGATGAGAAAACTGATATATTTTCTTTTGGGGTCTTACTTCTGGAGATCATAAGTGGGCGTCCAGCTTTGGATGATATGCAGAAAAGCCTTGTGCTGTGGGCCAAACCTTTGCTTGAAGCTAAGAATATTGAAGCACTTGTTGATCCTTCTCTTGATGATGATTATGATAAGGACCAAGTAGGTCATGTTGTTTTCACTGCATCGAAGTGTGTTGATCAGTCTCCTATTTTAAGGCCTTGCATGAGTGAGGTTGTGACACTACTAAGAGGTCACGATAAGTGTGACTTAGAATCTACAAGAAAAGGTCAAAGAAAGTCGCTTCAGAGAACATACTCAGAAGAGCTACTAGATGCACAAGAATACAACTCAACAAAATATCTTAGAGATCTCAATCGACATAGACAACTTGCCTTGGGTTCTTGTGAATCTTGA 549 0.4044 ICDFGLAKWLPEQWTHCNVTKIGGTFGYFAPEYCMHGIVDEKTDIFSFGVLLLEIISGRPALDDMQKSLVLWAKPLLEAKNIEALVDPSLDDDYDKDQVGHVVFTASKCVDQSPILRPCMSEVVTLLRGHDKCDLESTRKGQRKSLQRTYSEELLDAQEYNSTKYLRDLNRHRQLALGSCES* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1760 182 Gene3D Transferase(Phosphotransferase) domain 1 1 154 - -
Amo19g1760 182 SUPERFAMILY Protein kinase-like (PK-like) 1 142 IPR011009 -
Amo19g1760 182 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 1 174 - -
Amo19g1760 182 PANTHER OS08G0249100 PROTEIN 1 174 - -
Amo19g1760 182 Pfam Protein tyrosine and serine/threonine kinase 1 73 IPR001245 GO:0004672|GO:0006468
Amo19g1760 182 ProSiteProfiles Protein kinase domain profile. 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1760 Amo-Chr19 49631678 49632607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1760 1 178 Trihelix Transcription Factor Family AT1G70460 36.559 2.20e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo19g1760 PK_Tyr_Ser-Thr 1.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1760 - - aip:107615479 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0648 16 10522937 10528282 Amo19g1760 19 49631678 49632607 ECH
Amo16g0054 16 792950 794834 Amo19g1760 19 49631678 49632607 ECH
Amo12g3017 12 117794711 117800523 Amo19g1760 19 49631678 49632607 ECH
Amo14g0478 14 6699027 6701417 Amo19g1760 19 49631678 49632607 ECH
Amo19g1760 19 49631678 49632607 Amo19g1760 19 49631678 49632607 ECH