Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1758 ATGGTGGCCGGAGACAGAGCTGTTAGTGCTTCCAAGAGCCACAGTCAAGCCGAGAAGCGGCGCAGGGACCGAATCAATGCACAGCTTACAAGTTTAAGGAAACTAATTCCAAAATCTGATAAGTGTAACAAGTTGATCTTGCATATGGACAAGGCAGCTTTACTAGGAAGTGTGATAGAGCAAGTGAAGGATCTAAAGAGAAAAGCGATTGAAGTTAGCAAAGTTTCAACTGAATCCGACAAAATAGTTAAAGGGAGAGAAATCAACCTGAAAGTAGTAGCTAGCAAGAGGCTTTTATATTATGAATTTGACTTCAGGGCTCATGATTCTGCATTCAAAGACAGATACCTACAGTTTCAAAATGTGAGGGTGAGGTTCATACCAACTGAGAAGAAAGACATCCGAGATATATATGCAGCACCAAATCAAAGACCAACAATATATGACATGCATGAGAAAACGGTGGATGAAAAATATTACTATTCATTTGAATATGTGCTTACTTCTCCAAATTACTTAAGTGCCTCATTTGCAACAATTGCTATAGGAAATGGAAGGTACTGGCCGTTAATTGTGGGAGCCAATGAGAGGCGATGGAAAAGATATCGAGATTAG 615 0.3984 MVAGDRAVSASKSHSQAEKRRRDRINAQLTSLRKLIPKSDKCNKLILHMDKAALLGSVIEQVKDLKRKAIEVSKVSTESDKIVKGREINLKVVASKRLLYYEFDFRAHDSAFKDRYLQFQNVRVRFIPTEKKDIRDIYAAPNQRPTIYDMHEKTVDEKYYYSFEYVLTSPNYLSASFATIAIGNGRYWPLIVGANERRWKRYRD* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1758 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 68 IPR036638 GO:0046983
Amo19g1758 204 SMART finulus 15 71 IPR011598 GO:0046983
Amo19g1758 204 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 138 204 - -
Amo19g1758 204 Gene3D - 5 74 IPR036638 GO:0046983
Amo19g1758 204 Pfam Helix-loop-helix DNA-binding domain 12 65 IPR011598 GO:0046983
Amo19g1758 204 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 1, CHLOROPLASTIC 101 204 - -
Amo19g1758 204 SUPERFAMILY Mog1p/PsbP-like 102 202 IPR016123 -
Amo19g1758 204 MobiDBLite consensus disorder prediction 1 23 - -
Amo19g1758 204 PANTHER - 101 204 - -
Amo19g1758 204 Pfam PsbP 104 203 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Amo19g1758 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1758 Amo-Chr19 49599580 49600836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1758 1 109 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.248 3.45e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g1758 PsbP 2.3e-10 CL0619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1758 - - gmx:100813624 182.956