Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1708 ATGGATCCTCACCAAGGTCATAACCAAAACCCATCCATGGGAGTTGGTGGCAGCGGAGCACAATTCCCCTATGGTTCCAATCCATACCAGCCCAACCAAATGACTAGCTCACCTGGGATGGTTGTTCCACCAATTGGAACCATTCAATCCACTGGTCAGCCTGCTACAGCTCAATTGGGCCAACATCAACTGGCTTATCAACATATTCATCAACAACAACAGCAGCAACAGCAGATGCAACTTCAGCAACAACTTCAGTCCTTTTGGGCTAACCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATCATGAAGGCTGATGAAGATGTCAGGATGATATCGGCCGAGGCGCCGGTCATATTTGCGAGGGCATGCGAAATGTTCATACTGGAGTTGACATTGCGATCATGGAATCACACTGAAGAGAACAAGAGGAGGACTCTTCAAAAGAATGACATTGCTGCTGCAATTACAAGAACCGATATCTTCGATTTCTTGGTTGATATTGTGCCCAGGGAGGATCTGAAAGATGAAGTGCTTACATCAGTGCCAGGAGGAACAATGGCTGTTCCAGGGCCAGCTGATTCTATTCCTTACTGCTATATGCCGCCACAGCATGCACAAGTTGGAGCTGCAGGAGTCATGATGGGTAATCCTGCAATGGACCCCAATTTATATGCTCAGCAGCCTCATCCCTACATCGCACCGCAAATGTGGCCACAGCCACCAGAGCAACAACAGTCGCCTTCGGATCATTGA 795 0.478 MDPHQGHNQNPSMGVGGSGAQFPYGSNPYQPNQMTSSPGMVVPPIGTIQSTGQPATAQLGQHQLAYQHIHQQQQQQQQMQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSVPGGTMAVPGPADSIPYCYMPPQHAQVGAAGVMMGNPAMDPNLYAQQPHPYIAPQMWPQPPEQQQSPSDH* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1708 264 SUPERFAMILY Histone-fold 76 178 IPR009072 GO:0046982
Amo19g1708 264 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 264 - -
Amo19g1708 264 MobiDBLite consensus disorder prediction 1 16 - -
Amo19g1708 264 MobiDBLite consensus disorder prediction 23 39 - -
Amo19g1708 264 Gene3D Histone, subunit A 66 184 IPR009072 GO:0046982
Amo19g1708 264 MobiDBLite consensus disorder prediction 1 39 - -
Amo19g1708 264 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 106 169 IPR003958 -
Amo19g1708 264 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1708 Amo-Chr19 45005759 45008365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1708 17 263 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.134 1.24e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo19g1708 CBFD_NFYB_HMF 6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1708 K08066 - gmx:100527803 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1708 19 45005759 45008365 Amo09g1140 09 30168012 30170296 hybridization