Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1690 ATGGAACAACAAGAATACACCAAGGAAAAGATTGGTTGGAGTTACATAGAATTTGTTGACAATCAAGATGTTCTGGATTTGGTTGAAAATAAACCTGAAAGAATAATTGAACTTCTTGATGAAGCCTGGTATGCTAATGGCGTTGATTTTCTACACGAAACATTTGCTCAGAAGTCGTACCAGACATTCAAAAACAACAAGTGGTTTATCAAACCTAAACTTTTCCGAACTAGTTTTACCATATCTCACTATATAGGGGAGGTGACATATCTGGCTGATATGTTTCTTGACAAAAACAAGGATTATTTGCATCGTGAAGTAGCAACTCTGAAAATAGAAAAGAACCTCAAAGGATACATTGCTAGGAAATCTTTCTTAAGTGTACGATCATTTGCAATAATAATACAGACATGTTTAAGGGCTATGAAGGTTCGTGATGAATTTAGATTTAGAACGCAAACAAAGGTTGCAATTCATATCCAGGCTAATTTACGCCGAAAAATTGTATTTTCATATTATAAAAAGTTGCAAAAGGCTACAATTGTTACTCAGTGTCGCTGGAGGAGAAGGGTTGCTAGGAAGGAACTTAAAATGCTCAAAATGAAAAACAGGGCCCTTAAGGAAGCAAAAGACAAACTAGAGAAGCGTGTAGAAGAACTTACATGGCATTTGCAAATTGAGAAGCGTTTGAGGACTGATTTGGAAGAGGAAAATGTACATGAAATTGTCCAAGTATATGAAGCAAATTCCATAGCAGCTAAAGAGCGTGAGGCAGCACGGAAAGCCATTGAAGAAGTACCACTAGTTATTAAGCACCACCAAGCTGAAGTTAAAGATTCTGATCGTAAAGTGGAACAACTTCAAGAATTGATTCAGAGGTTAGTAGAGAGCCTAACTACATAA 903 0.3643 MEQQEYTKEKIGWSYIEFVDNQDVLDLVENKPERIIELLDEAWYANGVDFLHETFAQKSYQTFKNNKWFIKPKLFRTSFTISHYIGEVTYLADMFLDKNKDYLHREVATLKIEKNLKGYIARKSFLSVRSFAIIIQTCLRAMKVRDEFRFRTQTKVAIHIQANLRRKIVFSYYKKLQKATIVTQCRWRRRVARKELKMLKMKNRALKEAKDKLEKRVEELTWHLQIEKRLRTDLEEENVHEIVQVYEANSIAAKEREAARKAIEEVPLVIKHHQAEVKDSDRKVEQLQELIQRLVESLTT* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1690 300 SMART iq_5 104 126 IPR000048 GO:0005515
Amo19g1690 300 SMART iq_5 152 174 IPR000048 GO:0005515
Amo19g1690 300 SMART iq_5 127 149 IPR000048 GO:0005515
Amo19g1690 300 SMART iq_5 175 197 IPR000048 GO:0005515
Amo19g1690 300 ProSiteProfiles IQ motif profile. 105 131 IPR000048 GO:0005515
Amo19g1690 300 PANTHER MYOSIN 103 241 - -
Amo19g1690 300 PANTHER MYOSIN 1 103 - -
Amo19g1690 300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 202 IPR027417 -
Amo19g1690 300 Coils Coil 189 230 - -
Amo19g1690 300 ProSiteProfiles Myosin motor domain profile. 1 107 IPR001609 GO:0003774|GO:0005524|GO:0016459
Amo19g1690 300 Pfam Myosin head (motor domain) 2 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
Amo19g1690 300 Coils Coil 270 297 - -
Amo19g1690 300 Gene3D - 1 129 - -
Amo19g1690 300 Gene3D - 152 206 - -
Amo19g1690 300 Pfam IQ calmodulin-binding motif 178 197 IPR000048 GO:0005515
Amo19g1690 300 Pfam IQ calmodulin-binding motif 130 149 IPR000048 GO:0005515
Amo19g1690 300 ProSiteProfiles IQ motif profile. 176 205 IPR000048 GO:0005515
Amo19g1690 300 PANTHER MYOSIN-17 103 241 - -
Amo19g1690 300 PANTHER MYOSIN-17 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1690 Amo-Chr19 43293345 43298935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1690 103 298 Myosins gene family AT5G20490 52.381 3.91e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1690 K10357 - gmx:100777802 233.032