Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1647 ATGCGGAAGAAATCAAAGATACCCATTAATCAGTCTATTCACTGCACGCGAGAAGGTTATCGGGAGTCTCGGGTGAAGGCAGCAACTCGGGCAAACAGAATTACAGCCATGAGATGCAGAGCAAGGATGTATGTCATGCTGGACAGGAAGAAGAAAAGTTGGATTGTGTCTAGATTAGAATTGAGGCATTCCCACCCCTGTTCGGCTAAGAAAGCGGTCCACTATCATGAGTATAGGGAGTTGACAATGCATGCTAAGTGCGTCATTACGGATAACGACGAGGCTGGCATAAGACCCAACAAGACATATCTAGCATTGTTCTTTAAAAGCGGTCATCATGTTGTGTCTAAGCGACACTCTTATGCTCTGTTTTTTTATGTTCACCTTTATGCCAATCGACGGAAGTGGGTTCCAATATTCTTCAAGAGTGAATTTTGGGCCGGTATGAGGAGTACACAGTGGAGTGAAAGTATGCACGCATTTTACGGGGGGTTTCTGCATTGCAAGAGTGGGTTAGTCCAATTTGTCCATAAATACGACAATGTGCTTGTAAACAAGGAGCAGAAGGAGCTGGAAGATGATGTTACGGACTCGAAAGGACTAGAGGTAAGCAAAAAAACTGATTGCGTGGTTCGGTCAACTGAACAACAGGGTTATTCAATTTCTGTTAAAGTGGACAAGCAGAAGATAGTTTGGGAGAAGACTGTTTACCGTACTTTCACAGTAGATTTTGACCCATTGAGTCAAGAGGTTCGGTGCGAGTGCAACAAGTTTGAATCCACTGGTATATTGTGTTGCCACACCCTTGCGGTGTTTTCATACTACAGAGTTGACAGAGAGTTCATTACTTGTGATGAGGAAGCAGCCATCTTGCGATCTGCCCTTTGGGATGGAAAGTCCAAGCTAACTGATTATTGTGCCAGCATGCGTTTGACTACTGTTACTGCGACTCGGAATACCATGCCCACACAGAGCACAAGCGGTGTTATTGTACATGACATATGGGGACCCTCAAGAGTTGAAACTAAAGGACAGCTGAAGAGTAAGAGACTTGGAGCAGAGTTGGACAAGTCAATTAAGAAATCGATGCAAAAAAGGAAGAGAAAATCGCATCTGACAGATAATGATTATGATGGTTCTATAAAGAAAGGATTTGAGGCTTCTACCACTTGGAATGCATTGGATGGTGGCGGATTCATGTCTCTGTTGAACTCTTTTGAGCATAGATAG 1230 0.4366 MRKKSKIPINQSIHCTREGYRESRVKAATRANRITAMRCRARMYVMLDRKKKSWIVSRLELRHSHPCSAKKAVHYHEYRELTMHAKCVITDNDEAGIRPNKTYLALFFKSGHHVVSKRHSYALFFYVHLYANRRKWVPIFFKSEFWAGMRSTQWSESMHAFYGGFLHCKSGLVQFVHKYDNVLVNKEQKELEDDVTDSKGLEVSKKTDCVVRSTEQQGYSISVKVDKQKIVWEKTVYRTFTVDFDPLSQEVRCECNKFESTGILCCHTLAVFSYYRVDREFITCDEEAAILRSALWDGKSKLTDYCASMRLTTVTATRNTMPTQSTSGVIVHDIWGPSRVETKGQLKSKRLGAELDKSIKKSMQKRKRKSHLTDNDYDGSIKKGFEASTTWNALDGGGFMSLLNSFEHR* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1647 409 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 127 279 IPR031052 GO:0006355
Amo19g1647 409 ProSiteProfiles Zinc finger SWIM-type profile. 240 276 IPR007527 GO:0008270
Amo19g1647 409 Pfam SWIM zinc finger 252 275 IPR007527 GO:0008270
Amo19g1647 409 PANTHER OS06G0517100 PROTEIN 127 279 - -
Amo19g1647 409 SMART 26again6 251 278 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1647 Amo-Chr19 42037048 42039374 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g1647 SWIM 6.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1647 - - ahf:112730161 396.356