Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1642 ATGGATCAAGCGCGATCATCTTCTGGGAACAACATCAACAACAACAATGGCGAGGACAATGTGGGAATTCCCGACGACCTCCGGTGCAAGCGTTCCGACGGGAAGCAGTGGCGGTGCACCGCCATGTCGATGCCGGACAAGACCGTCTGCGAGAAGCACTACATCCAGGCCAAGAAGAGGGCCGCCAATTCCGCCATGAGAGCTAACCTCAAGAAGGCTAAGCGCAAGTCTGGAGATTCCGAGGGACACCTTGAAAGCAAGAGTGACGATTTCGATATTCCTCTGTCCGCCATGAAGCACGGTGGTGGGGAGCATAGTTCTGGTGGCGGCAGCAGGTTGTTGGATAAGGTGGGGAAGAATCAGTTCAGGTATGTCCCCAAGAAGGGGGCCATGTCGGGGCGATCCTCGCTTCCCAAGCCAGATGAGGAGGATGAGGAAGATTATGAAGAAGAGGAGGAGGATGAGGAAGAGGTGGAGGAGGAGGAGGGTGTGCCTCTTTATGAGGAAAATTGGACGGGTCACGAGTCGCCTGAGCTGGCTTCTGGTGGGGACTCGTCCAGGAAGAGGAGGAGCTTGGAGGCCACTAATGTCACTACTGAATACTCGGATGCAAGCACCGACTCCTCGGAGGAGACTGGTGACACTGGCGGGCAGACATGCCATCAGTGCCGGAGGAATGACAGAGACAGGGTGGTTACTTGGTGCCAGCGGTGTGATCGAAGAGGATACTGTAATAGCTGTATATCAACTTGGTACTCAGACATTTCGCTGGATGAAATTCAGAGGATGTGTCCTGCGTGCCGTGGTATTTGTAACTGTAGAGTTTGTGTACGTAGTGATAATTCAATAAAGGTTCGGATACGGGAGATACCTGTTCTAGATAAGTTACAGTATCTCCACTCGCTGTTGTCAGCAGTGCTTCCTGTAGTAAAACAGATCCACCAAGAACAGTGTTTTGAAGTTGAGCTCGAAAAGAAGTTGCGTGGTGCGGACATAGATCTTCCCCGGATAAAATTGGGGGCAGATGAACAGATGTGCTGCAATTTATGTAGGATACCCATCACTGATTATCATCGGCGCTGTCCAATTTGCTCATATGACTTGTGCCTTAATTGTTGTCATGATCTTCGAGAAGCAACTTCAGATTACAACAAAGAACCACAAACAGAATTAGCGAAAGCTTATGACCAAAACATATTAAGTAAGTTTCCTCATTGGAGATCCAATGATAATGGAAATATTCCATGCCCCCCTAAGGAATATGGTGGCTGTGGTTATTCGTCGTTAAATTTGAGCAGGATTTTCAAGAGGAATTGGGTTGCAAAGTTGGTGAAAAATGTAGAAGAAATGGTTGGTGGCTGTAAGATTAATAATGCTGATGATCTACCAGAAACTCAGTTGAATGCTGTCAGATTGCGCAAATGTTCTCATAGAGAGACTAGTGATGATAACTATCTTTATTGTCCTGCATCTGAAGATCTCATGAAAGATGGGATTGGAAATTTTAGAAAGCACTGGAAAACCGGTAAACCCATTATTGTTAAGCAAGTGTTTGATAGATCATCCTCTTCTAGCTGGGATCCGCTGGTCATCTGGAGAGGGATTCTAGAGACAACAGATGAGAAAATGAAAGATGAAAACAGAGTGGTTAGGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTAGTTACTTCATGACTGGTTACACTGAGGGGCGTACTCATGAAAATGGTTGGCCACAGTTATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAGTTTCTCTTGTACCAAAGACCAGAATTTATCGGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCTTATGGAATCAATCATGAACTTGGTAGAGGTGATTCAGTGACCAATCTCCACTTCAATATGCGGGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTAATGTTGAAGGACTGGCAGAGAACTAAAATTGAAATGATCCAAAAAGAATACAAGGAGATAGAGGTGAAGGAATCACCTGGAGATAATCAAATGTGTTCTAGCAGGAGTTCACCTAACTCGGCATTTGGTACAGAAAATAATGGGCTGGATTTGGATCCAAACCTGAGTAAGTCACTGGATCAAGGGTTTGAAAATCATTCTAGTTCTGATGGGAATATGGTCAATTATGAACTTCCATTCAAACAAAATGGAAATTTCTCTGAGCAAATGCATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGTTGAATGAATATTTGAAAACACATTGGAATGAGTTTGGAAAGCCAGATGATATATTAAATGAATATGTTACATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAGACACCAAAAAAGAAAGCTGAAGGAAGAATTTGGAGTGGAGCCCTGGTCATTTGAACAGAATTTGGGGGAAGCTATCTTTGTTCCTGCTGGTTGCCCTTTCCAGGCAAGAAATGTTCAGTCCACTGTTCAGTTGGGGCTTGATTTCTTATCTCCCGAGAGCCTGGGAGAGGCTGTTAGACTGGCAGAGGAAGTCCGCAGTCTACCTAATGAACATGAAGCAAAACCTCAAGTATTGGAGGTTGGAAAGATCTCTCTTTATGCTGCAAGTTCATCTATCAAAGAGATTCAGAAACTTGTACTTGATCCAAAGCTTGGTGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTATCTGAGAATTACGAGAAGATGGTTAAGCGACGGCAGATTACTTGTGCTTGA 2874 0.4457 MDQARSSSGNNINNNNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSGDSEGHLESKSDDFDIPLSAMKHGGGEHSSGGGSRLLDKVGKNQFRYVPKKGAMSGRSSLPKPDEEDEEDYEEEEEDEEEVEEEEGVPLYEENWTGHESPELASGGDSSRKRRSLEATNVTTEYSDASTDSSEETGDTGGQTCHQCRRNDRDRVVTWCQRCDRRGYCNSCISTWYSDISLDEIQRMCPACRGICNCRVCVRSDNSIKVRIREIPVLDKLQYLHSLLSAVLPVVKQIHQEQCFEVELEKKLRGADIDLPRIKLGADEQMCCNLCRIPITDYHRRCPICSYDLCLNCCHDLREATSDYNKEPQTELAKAYDQNILSKFPHWRSNDNGNIPCPPKEYGGCGYSSLNLSRIFKRNWVAKLVKNVEEMVGGCKINNADDLPETQLNAVRLRKCSHRETSDDNYLYCPASEDLMKDGIGNFRKHWKTGKPIIVKQVFDRSSSSSWDPLVIWRGILETTDEKMKDENRVVRAIDCLDGSEIDIELSYFMTGYTEGRTHENGWPQLLKLKDWPSPSASEEFLLYQRPEFIGKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGINHELGRGDSVTNLHFNMRDMVYLLVHTSEVMLKDWQRTKIEMIQKEYKEIEVKESPGDNQMCSSRSSPNSAFGTENNGLDLDPNLSKSLDQGFENHSSSDGNMVNYELPFKQNGNFSEQMHPGVLWDVFRRQDVPKLNEYLKTHWNEFGKPDDILNEYVTWPLYDGAIFLDRHQKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRSLPNEHEAKPQVLEVGKISLYAASSSIKEIQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1642 957 SUPERFAMILY Clavaminate synthase-like 503 890 - -
Amo19g1642 957 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g1642 957 MobiDBLite consensus disorder prediction 707 727 - -
Amo19g1642 957 Gene3D Cupin 482 896 - -
Amo19g1642 957 Pfam JmjC domain, hydroxylase 771 866 IPR003347 -
Amo19g1642 957 Pfam WRC 24 64 IPR014977 -
Amo19g1642 957 ProSiteProfiles Zinc finger RING-type profile. 220 268 IPR001841 -
Amo19g1642 957 SMART cupin_9 601 887 IPR003347 -
Amo19g1642 957 PANTHER JMJC DOMAIN PROTEIN JMJ24 16 946 - -
Amo19g1642 957 MobiDBLite consensus disorder prediction 704 727 - -
Amo19g1642 957 MobiDBLite consensus disorder prediction 72 94 - -
Amo19g1642 957 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 216 281 IPR018866 -
Amo19g1642 957 MobiDBLite consensus disorder prediction 61 220 - -
Amo19g1642 957 ProSiteProfiles JmjC domain profile. 594 887 IPR003347 -
Amo19g1642 957 ProSiteProfiles WRC domain profile. 23 67 IPR014977 -
Amo19g1642 957 MobiDBLite consensus disorder prediction 142 166 - -
Amo19g1642 957 MobiDBLite consensus disorder prediction 195 220 - -
Amo19g1642 957 Coils Coil 141 161 - -
Amo19g1642 957 MobiDBLite consensus disorder prediction 1 29 - -
Amo19g1642 957 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 946 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1642 Amo-Chr19 40861488 40869182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1642 24 64 GRF Transcription Factor Family AT3G13960 46.341 3.10e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo19g1642 JmjC 2.2e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1642 K15601 - gmx:100792166 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1642 19 40861488 40869182 Amo19g1642 19 40861488 40869182 ECH
Amo06g0281 06 3818313 3822746 Amo19g1642 19 40861488 40869182 PCT
Amo19g1642 19 40861488 40869182 Amo06g0281 06 3818313 3822746 PCT