Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1637 ATGGCTACTGGTAGTGGGAAATCCTTTTACCAGGTACCACCCTTGGTTGTTAGAAAGACTGGGATAGTTGTTAGCCCTCTAATATCATTGATGCAAGACCAGGATTCCACTGTTCAGAGAAAAGCCGAGCAGGGTCAATTTGACATTTTGTTCATGACTCCGGAAAAGGCTTGCTCAGTTCCTACCAGTTTCTGGTCTAACTTGCTGAAGGAAGGAATTAGCCTTTTTGCTGTTGATGAAGCTCATTGTATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGAACTTACACAATTTACGTGGTGTTCTACTAGATGTTCCTTTTGTTGGCTTAACTGCGACAGCTATTGAAAAGATAAATATGTTGAGACCTCCTCCAAAAGAGAAAAATGGACAAAACCAGAGCTCTCTCCATTCTAATGGTCTCTGCTCTCAAATAGTGGCAGATACTATGGATAATCCTACTCTCTATAAATCAGATATATCCAAGTCACTTGCGGAAGCAGGAATTGAGGCTGGAATGTACCATGGCCAAATGGATAAAAAATCTCGTGAAGAGTCTCATAGGGATGAACTGCAAATCATGGTGGCTACAATTGCTTTTGTCATGGGCATAGATAAGCCTAACATAAGACAAATGATTCATTATGGTTGCCCTAAGAGTATTCCATTCCCATGGGAATCAAAGATACCCAAAGAGAAAGTGGGAATTGAAATGATGTTGCCACTTCATGCATATTTCACATTACAAGTTATAACCATTATATTCCGGCTTCCAATTTGCCAGGAAACCCAAAAAAGAGATGTTATGGATTCATTACTCGCTGCTGAACGTTATTGTGTGCTTGCAACTTGCAGGAGAAAGTTCTTGCTTGAACACTTTGGGGAACAATATCCAGCTGATAGATGTGGTTTGGCTTTCACTTGTACCCTTCAATATAATCACAGTTTTAGTCAAATAAAAGCTTAA 975 0.399 MATGSGKSFYQVPPLVVRKTGIVVSPLISLMQDQDSTVQRKAEQGQFDILFMTPEKACSVPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKNLHNLRGVLLDVPFVGLTATAIEKINMLRPPPKEKNGQNQSSLHSNGLCSQIVADTMDNPTLYKSDISKSLAEAGIEAGMYHGQMDKKSREESHRDELQIMVATIAFVMGIDKPNIRQMIHYGCPKSIPFPWESKIPKEKVGIEMMLPLHAYFTLQVITIIFRLPICQETQKRDVMDSLLAAERYCVLATCRRKFLLEHFGEQYPADRCGLAFTCTLQYNHSFSQIKA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1637 324 Gene3D - 160 225 IPR027417 -
Amo19g1637 324 Pfam Helicase conserved C-terminal domain 148 224 IPR001650 -
Amo19g1637 324 Gene3D - 39 124 IPR027417 -
Amo19g1637 324 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 314 - -
Amo19g1637 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 223 IPR027417 -
Amo19g1637 324 Gene3D - 1 38 IPR027417 -
Amo19g1637 324 Pfam RecQ zinc-binding 264 306 IPR032284 -
Amo19g1637 324 Gene3D - 261 317 IPR036388 -
Amo19g1637 324 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 121 IPR014001 -
Amo19g1637 324 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1637 Amo-Chr19 40411404 40416755 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1637 K03654 - gmx:100797777 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1637 19 40411404 40416755 Amo19g1637 19 40411404 40416755 ECH
Amo19g1637 19 40411404 40416755 Amo09g1065 09 25102568 25108487 hybridization