Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1622 ATGGGTCTTGGGATGAAATATGACGAAGAAAGCAAGGTGGTTGACGATGGAGGAGAGGGTGGCGGTGGTGGAGCTAATTCGTTTGATTCTGTCTCATGTTCAATTTGCCTTGACGCTGTTATCGATAATGGGGATCGATCGTTGGCTAAGCTTAAATGTGGCCATCAATTTCATCTTGATTGTATTGGTTCAGCATTCAATATGAAAGGAACAATGCAATGCCCTAATTGTCGAAAGATTGAGAAAGGTCAATGGCTTTATGCTAATGGTGGCCGGTCATATCATGATTACAGTATGGATGATTGGACTCATGATGAGGACCTTTATGACCTTAGCTACTCTGAAATGTCCTTTGGAGTTCATTGGTGCCCATTTGGCAACTTGGCGAGACTTCCATCATCTTTCGAGGACGGAGAATTTTCATCAAGTGCATATCATGATATACTGGAAGGACAACATGCTGTATATGCTGAGCATCATAACACAGTTGTAAATTCTGTTAATCATCCTTGCCCATATGTTGCATATTTTGGAGCAATACATCCATCTTCCTCCAACTCAGGTGGAAATGTTTCAGAGATTTCCACCTTCAGTCATTGGAATGGTTCATCTGTGCATAGTGACATGCCCACTTCCTACACGTATCCTACTTTGGATCTTCATTATCATAGTTGGGAACAACATTCCCCTCCTTTCTCTACATACAGTAGTCGTCTAGTTGCCGGTGATCGCCGGTCGATATCTCCTCGGACTCAAAGGCCATCCAGGGGTGGCTCAGAGGTACCAAGATCAAGTTCTTATATGCATCCTCCTGGGGGTCACAGTTCTTCAGGTTCTGTGAGCTCAGTTACTTCCTCAATGCTACCTCCTTATCCTGGTAGCAACGCTCGATCCCGTGATAGTGTTCAAGCGCTTCAAGCTTACTATCAATCACCAATGCGAACACACGTTCCTTCTGGATCCCGAAGATCTGGTAATCATAGTGGATCACCTCAAATTGCACCATTTTCCACATCACCGGACCAAAGCGGTTTCTTTTTTGTCCCATCAAGTTCTTCAGGTCGTAGTAGTTTTCCAGAAGATGCATGTCTCCCAAGTCGCTACCATGCTTGGGAACGAGAGCACATATCTTCTTTAAGCATTGTTGATAGAGATTCAGCCTGGAGACAATACCGCCAAACTGTTGGTAGGTCAGAACGCTCTAGCAACTATCGATTAAGGCATGGATCCGAAAGAATGCATTCCCATAATCGATGA 1257 0.4423 MGLGMKYDEESKVVDDGGEGGGGGANSFDSVSCSICLDAVIDNGDRSLAKLKCGHQFHLDCIGSAFNMKGTMQCPNCRKIEKGQWLYANGGRSYHDYSMDDWTHDEDLYDLSYSEMSFGVHWCPFGNLARLPSSFEDGEFSSSAYHDILEGQHAVYAEHHNTVVNSVNHPCPYVAYFGAIHPSSSNSGGNVSEISTFSHWNGSSVHSDMPTSYTYPTLDLHYHSWEQHSPPFSTYSSRLVAGDRRSISPRTQRPSRGGSEVPRSSSYMHPPGGHSSSGSVSSVTSSMLPPYPGSNARSRDSVQALQAYYQSPMRTHVPSGSRRSGNHSGSPQIAPFSTSPDQSGFFFVPSSSSGRSSFPEDACLPSRYHAWEREHISSLSIVDRDSAWRQYRQTVGRSERSSNYRLRHGSERMHSHNR* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1622 418 SUPERFAMILY RING/U-box 29 80 - -
Amo19g1622 418 ProSiteProfiles Zinc finger RING-type profile. 33 78 IPR001841 -
Amo19g1622 418 MobiDBLite consensus disorder prediction 269 300 - -
Amo19g1622 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 87 IPR013083 -
Amo19g1622 418 MobiDBLite consensus disorder prediction 314 347 - -
Amo19g1622 418 MobiDBLite consensus disorder prediction 397 418 - -
Amo19g1622 418 PANTHER PROTEIN, PUTATIVE-RELATED 21 418 - -
Amo19g1622 418 MobiDBLite consensus disorder prediction 243 300 - -
Amo19g1622 418 SMART ring_2 33 77 IPR001841 -
Amo19g1622 418 Pfam Ring finger domain 32 78 IPR001841 -
Amo19g1622 418 PANTHER OS09G0511500 PROTEIN 21 418 IPR044274 GO:0004842
Amo19g1622 418 MobiDBLite consensus disorder prediction 401 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1622 Amo-Chr19 39610917 39620283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1622 29 78 C3H Transcription Factor Family AT1G53820 40.000 8.68e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1622 - - adu:107465306 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1005 16 16323439 16327921 Amo19g1622 19 39610917 39620283 PCT