Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1601 ATGTCCTCGTTGTTGTCACCATCAAGCTTCTATGTCAATGTCGTTGCTCGCCGTCTTCCTCTGATCATTCTGCCGTTGCTCGTCGTCGTGTCATTCTTTTCTCACTATCGCTCCTATGCTCACTCCTTTGTCGCAGATCATCACATCGCTGTCCAGATCTCTCGTTGCTCATCACCGTGTCGTTCTTTTCTCACTGTTGCCTCCTCTGGTCTTGCCACCTCCTCTGCTCATCACTCCTTTGTCACAGATCATCACATCAATGACCAGATCAGTCGTTGCTTGTCATTGGGTCATTCTTTTCTCACTGCCGCCTCCTCTGGTAACTTCTTCTCCAACAACAACAATAGTCCTCCGGTGAAGCTGACAGGATATGGAGAAAGTATGATCCAATTTATATTGAAGATAAACCTCTTAGGAGGTTTAAAGGCGAAATTGACATCCCCGGTTATTCTAAATATTGAAGATCCTGACCGGAATAAAAAAATGTCTTATTATGAGTACACTCATCACGCAACGGACTTGGAGTTTCAGGTATTGAAACACTTGTTATATCTTATGGGCTTTGCCAAAAAGGGTGTTCAACAGCGTGTTGCTCTTGCTCTTGCTCATTTATGTCCTATTGATGATTGTAGAACTATCTTCATTGACAACAATGGAAAAAGATTCTATGCTCATCGAGTTTGTTTAGTCAAGTCAGATGTATTTCGAGCAAGGTTTTATGGTGGTTACAGGGAAATGGAAGCCAAAGATATAGTGGTTCCAGACATCAAATGGGATGTATTTGAATTGATGAAGAGGTGA 801 0.4245 MSSLLSPSSFYVNVVARRLPLIILPLLVVVSFFSHYRSYAHSFVADHHIAVQISRCSSPCRSFLTVASSGLATSSAHHSFVTDHHINDQISRCLSLGHSFLTAASSGNFFSNNNNSPPVKLTGYGESMIQFILKINLLGGLKAKLTSPVILNIEDPDRNKKMSYYEYTHHATDLEFQVLKHLLYLMGFAKKGVQQRVALALAHLCPIDDCRTIFIDNNGKRFYAHRVCLVKSDVFRARFYGGYREMEAKDIVVPDIKWDVFELMKR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1601 266 ProSiteProfiles BTB domain profile. 210 266 IPR000210 GO:0005515
Amo19g1601 266 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 176 219 - -
Amo19g1601 266 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 218 266 - -
Amo19g1601 266 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 176 219 IPR044282 -
Amo19g1601 266 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 218 266 IPR044282 -
Amo19g1601 266 SUPERFAMILY POZ domain 213 264 IPR011333 -
Amo19g1601 266 Gene3D Potassium Channel Kv1.1; Chain A 207 266 IPR011333 -
Amo19g1601 266 Pfam BTB/POZ domain 214 264 IPR000210 GO:0005515
Amo19g1601 266 ProSitePatterns EF-hand calcium-binding domain. 155 167 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1601 Amo-Chr19 38853272 38856241 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo19g1601 BTB 0.00021 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1601 - - aip:110266649 246.128