Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1592 AAGCTTAAGCAAAAGCCCATTACAACTGCCATGGCCACAAGAACTACCTTGAAGACTCCATTACCAACTACCTTCTTCACCCTTCTTTCCCTCTTGATATTCCTTTCTCCATCTCTTGCTAATGATGATTTCACTTCCTCTCCATGCAACCTCACACCCCACCCTACATTTTGCACTGCCACTCTACCCTCTCCCAATATTTTATCCGTACACGACCAATGCCGGTTCTTCCTTAACCAATCCTTAGTAATAACAAAGAAGATTCTCGAAATGGTCTCTTCTTATCTAAGAGACCGCCGAATGAGAATTCCGGGTTCCACTTTACATGCTATCGAAGACTGCGTCAACTCTGCAGAACTGAACATTGATTTCTTGTCCATTGTCCTCAGAGATGCCGAAAGAACCGCCGCAAATAGCTATCAAGCTCATTATTATGATACACAAACAATGCTTAGCGCCGTCTTAACCAATCATCAAACGTGTATGGACGGTTTTAACGAAGTAACTCCATATCCAAGAATCACCGGGGGATTATCAAGTGTACTGTCAAATGCATACAAGCTTTACAGCGTTTCGCTGGCGCTTTTCGCTCACGGTTGGGTTAAAAACCCGGCCGCAAGACCAAGAACTACCATGAACAGAAAGTTACACCAAACAAACTTAGACGGCGACGAAGGGTTGGTGGTGAGAGAGAAAGTTGTGGTGAATCCGAACGGATCTGGGGATTTCACCACCATAAATGATGCTGTGGATGCAGCACCTAACAATACCGGCACCAACAATGGGTACCATGTTATTTATGTTGTTGCTGGGATTTACAATGAGTACGTGTCCCTGTCGAAGAACAAGCAGAACGTAATGATTGTTGGAGATGGCATCAATCGCACCGTGATCACTGGCAATCGAAGCGTGGTTGATGGATGGACCACTTTCCAATCTGCAACATTCGCTGTAGCTGGAAAAGGGTTTGTAGCAGTGAACATAACATTTCGCAACACAGCGGGCCCCGCCAAGCACCAAGCAGTAGCTGTAAGAAACAGTGCAGATATGTCCACATTCTACACCTGCAGTTTCGAAGGCTATCAAGACACACTGTACACGCATTCTCTAAGACAATTCTACAAAAACTCTGACATTTACGGAACAGTTGACTTTATCTTCGGCAACGCTGCAACTTTGTTTCAAGACTGCAACATCTTTCCAAGACTACCCATGCAAAACCAATTCAACGCTATCACGGCGCAGGGCCGAATGGATCCGAACCAAAACACCGGAATTTCCATTCAGAACTCATGGATCGTTGGAAATGATGGGAACTACAGCAGGGTAGAAACGTATCTGGGAAGGCCTTGGAAGGAGTATTCAAGAACGGTTTACGTGCAGTGTTTCATGGATGGGATAGTTGATGGAAAAGGTTGGGTTGAGTGGAATGGGGATTTTGCATTGAGGACCTTGTATTTTGCGGAATTTGCTAATTGGGGTCCAGGTTCAAATACTACTAATAGGGTCACTTGGGAAGGGTACCATCTGGTGGATGAAAATGATGCAGATGGTTTCACTGTGTACAATTTCATACAAGGTGATTCATGGTTGCCCAAGACTGGAGTGCCCTTCAAAGCTGGGTTATAG 1629 0.45 KLKQKPITTAMATRTTLKTPLPTTFFTLLSLLIFLSPSLANDDFTSSPCNLTPHPTFCTATLPSPNILSVHDQCRFFLNQSLVITKKILEMVSSYLRDRRMRIPGSTLHAIEDCVNSAELNIDFLSIVLRDAERTAANSYQAHYYDTQTMLSAVLTNHQTCMDGFNEVTPYPRITGGLSSVLSNAYKLYSVSLALFAHGWVKNPAARPRTTMNRKLHQTNLDGDEGLVVREKVVVNPNGSGDFTTINDAVDAAPNNTGTNNGYHVIYVVAGIYNEYVSLSKNKQNVMIVGDGINRTVITGNRSVVDGWTTFQSATFAVAGKGFVAVNITFRNTAGPAKHQAVAVRNSADMSTFYTCSFEGYQDTLYTHSLRQFYKNSDIYGTVDFIFGNAATLFQDCNIFPRLPMQNQFNAITAQGRMDPNQNTGISIQNSWIVGNDGNYSRVETYLGRPWKEYSRTVYVQCFMDGIVDGKGWVEWNGDFALRTLYFAEFANWGPGSNTTNRVTWEGYHLVDENDADGFTVYNFIQGDSWLPKTGVPFKAGL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1592 542 SUPERFAMILY Pectin lyase-like 230 541 IPR011050 -
Amo19g1592 542 CDD PMEI-like_3 49 200 - -
Amo19g1592 542 Pfam Plant invertase/pectin methylesterase inhibitor 46 195 IPR006501 GO:0004857
Amo19g1592 542 SMART PMEI_2 40 195 IPR006501 GO:0004857
Amo19g1592 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 197 IPR035513 -
Amo19g1592 542 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 195 IPR006501 GO:0004857
Amo19g1592 542 PANTHER PECTINESTERASE 29 541 - -
Amo19g1592 542 Coils Coil 115 135 - -
Amo19g1592 542 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Amo19g1592 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 198 IPR035513 -
Amo19g1592 542 Pfam Pectinesterase 233 528 IPR000070 GO:0030599|GO:0042545
Amo19g1592 542 Gene3D - 227 542 IPR012334 -
Amo19g1592 542 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 29 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1592 Amo-Chr19 38466023 38469675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1592 16 542 Carbohydrate Esterase AT4G02330 49.562 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1592 K01051 - gmx:100810329 731.865