Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1585 ATGTCTTCCCAAAACCAAGAATATGATGCGTACATTAGTTCCGGATTGCAGTTCCTTCATCCTTTTATTTCAGGTCTCTATGATGCACTCAAAAGTGTTGGACTGCATGTTTTAGCAGACGGCACCGAGCCCAAGACTAATAAACTTTTATTATCTGGCGCAATCGAACGATGCAGAGTTTCTATCATAGTTTTCACAATAGCTTATGCTGAATCAACCTTGTACTTGCAAGAACTCGTGAAAATAATGGAGTGTCATCGYAGGAAAGATCAGAAGGTTGTGCCCGTGTTRTATTGCTTAGATCCCTCCCAAGTATGCAATCTGAGCGGTTATTTTGGGGAGATTTTGTCGCGAACTCTGCAAGGAATCTCAAGGGATGAACACAGGATGTTGAGTTATGAGGCCGCCCTTCTTCAACAAGCTGCTTCCATTTTACCCAGGTTTCTTCCAGATATCTGGAATAACAGAAAAGTTATGAGCGATATAGTTGGACATGTTACATCCTTGATAGATTCAGCGAAATTATTCATTGCGAAGCATCCGGTGGGAGTAGACTCTCGTGTGCAAGATTTGATTCAACTCTTAAACAATCAGAAAGCAGATGGTGTCCTCATAATAGCAATATGGGGAATGGCGGGAATAGGTAAAACTACAATTGCCAAAGCCCTCTACAATCAAATTAGCCACAATTTCGAGGCGAGGACATTTGTCCCAGACATCCAGGATAGCATGGCGGATTATACAAGGAGGCGGCTTCATTTCATTTTGAGAGACCCATATGAAACACAAGCGCATAACTTTGACTCAACAAGAAAGTTATGGTGGGAAGGACTTCGTTGCTTAAAGGTACTTCTTATAGTTGATAATGTGAGAAGTGACCTAGAGCTGGGGTTTTTGGCAGTAACTCGTGAAAGTTTTGGTCCAGGGAGTATAATAATCATCACGACAAGAGCTAAACACGATCGACTTCATGAGATTGGAGTTAATCATATATATAGAGTGAAAGAAATGGACTACAACGAATGTGTTGAGCTTTTTAGTTGGAGCGCATTCAACAAAGCCACTCCTGAAAGAAGTTTTTCTGGTCTTATTAATTATGCAATTGAATATTCTGATGGACTGCCACTGGCTCTTGTGTGTGTTGGCTCTGCTGTATCTGAAAAAAGTATACAAGAGTGGGAGAATGTATTGGACAGCTTCAAAAGATTCCCCTTTGAAGATGTATGGCAGCAAAGGCCATATGATGTATTCTTGAGCTTTCGAGGCAAAGAAACTCGCTCAAAGTTCATCTCACATCTTTATGCCTCTCTTGAAAATGCTGATCCCTCGGAAGTGCGAAATCAAACTGGTAAGTTTGGACAAGCTTTTGATAACCTTATGAAAAGATATCCGGATAAAATAAATGGCAAGGAGCAGAGTTGGAGGAAAGCGCTCCGTGAAGTCGGGTGCATTGCAGGGTTTGTCATCCGAAAATCCAGGAATGAAAGTGAGGATATTAAGAACATTGTTGAACATATTACTCATATGCTGGACATGAAGGAACTGTTTGTTGCTAATCATCCGGTAGGAGTTGAATCTCGTGTTGAAGAGGTGATTGAACTGTTAAAAGACCAGCAGCAAGAAAATCCTCTCCTACTTGGTATATGGGGCATGGGAGGGAGTGGTAAAACAACCATTAGCAAAGTGATTTATAATAAACTTTTCCGCAAGTTTGAAGGTCGGTGTTTCCTCCTAAATATAAGAGAAGTTTGGGATCAAGATAATGGAATTCTTTATTTACAACAGCAACTTCTTTCTTCTATCTTCAAGACAACGAAAATAAAGGTAGAAAACATTGAATCTGGAAAGTCAATATTGGAAAAAAGACTTGGCCAGAAAAAGATTCTTCTTGTACTTGATGATGTGGACAAATTGGAGCAGCTAAATTCTTTAGCTGCAAGCCGTAAATGGTTCTGTCCTGGTAGCATAATAATCATCACAACAAGAGACGAGCATCTTCTACGTTGTCTTAGAATTGACAAGTTATATAGTATGAAAGAGTTAAATGACAAAGAATCCATTGAACTTTTTAGCTGGCATGCATTCAAAGAACCATGTCCAAAAGAAGAGTTTGCTTCACTTGCTAATGAAGTTGTTTCATATTGTGAGAGATTGCCACTGGCTCTTGAGGGAAAACTTGGCATGCATGGTTTGCTGCGAGACATGGGAAGAGAAATTATTCGCGAGAGTTTGCCAATGAAACCTGAGGAACGTAGTAGGTTGTGGAATCCAGATGAAGTGCTTAATGTATTATCAAAAGACCATGGAGATGAAGAACTCAGATTGCTTCAGTTTGCGAATGTGCAACTTGTTGGAGACTTTAAATTTCTTTCGACAGATCTTCGATGGTTGTGCTGGCATGAATGTCCTCCAGAATATACAATTGCAAACTTTTATCAGGGAAATTTAATGATGAAGAATCTAAAAATTCTCAATCTTAGTCATTCTCAACACTTGACACAAACTCCTGACTTTTCAAATATGCCCAATCTTGAAAAGTTAATACTCAAATATTGCCCAAAGTTGACTTCGGTTTCTCATACCATTGAACATCTCAAGCAAGTTCTTCTAATCAATTTGAAAGGGTGTTCAAGGCTTCGTGTACTTCCAAGAAGCATCTACAAGCTGAGATCTCTCAAAACTCTCATTCTCTCAGAATGTTCATTGATTGATAAGCTAGAGGAAGACATAGAACAGATGGAATCATTGGCAACTTTGATGGCAGATAAAACTGCCATAACACAAGTGCCTCATGCACTACTAAGATTAAAGAGCATTGTGTATATTTCTTTAAAAATTCGAAGTCACTTGGAAAACGAAAACTCCAGAGAGTGTGATCACCAAAGAGTATTGTGTGACTTGTCAATTTGA 2910 0.3928 MSSQNQEYDAYISSGLQFLHPFISGLYDALKSVGLHVLADGTEPKTNKLLLSGAIERCRVSIIVFTIAYAESTLYLQELVKIMECHRRKDQKVVPVLYCLDPSQVCNLSGYFGEILSRTLQGISRDEHRMLSYEAALLQQAASILPRFLPDIWNNRKVMSDIVGHVTSLIDSAKLFIAKHPVGVDSRVQDLIQLLNNQKADGVLIIAIWGMAGIGKTTIAKALYNQISHNFEARTFVPDIQDSMADYTRRRLHFILRDPYETQAHNFDSTRKLWWEGLRCLKVLLIVDNVRSDLELGFLAVTRESFGPGSIIIITTRAKHDRLHEIGVNHIYRVKEMDYNECVELFSWSAFNKATPERSFSGLINYAIEYSDGLPLALVCVGSAVSEKSIQEWENVLDSFKRFPFEDVWQQRPYDVFLSFRGKETRSKFISHLYASLENADPSEVRNQTGKFGQAFDNLMKRYPDKINGKEQSWRKALREVGCIAGFVIRKSRNESEDIKNIVEHITHMLDMKELFVANHPVGVESRVEEVIELLKDQQQENPLLLGIWGMGGSGKTTISKVIYNKLFRKFEGRCFLLNIREVWDQDNGILYLQQQLLSSIFKTTKIKVENIESGKSILEKRLGQKKILLVLDDVDKLEQLNSLAASRKWFCPGSIIIITTRDEHLLRCLRIDKLYSMKELNDKESIELFSWHAFKEPCPKEEFASLANEVVSYCERLPLALEGKLGMHGLLRDMGREIIRESLPMKPEERSRLWNPDEVLNVLSKDHGDEELRLLQFANVQLVGDFKFLSTDLRWLCWHECPPEYTIANFYQGNLMMKNLKILNLSHSQHLTQTPDFSNMPNLEKLILKYCPKLTSVSHTIEHLKQVLLINLKGCSRLRVLPRSIYKLRSLKTLILSECSLIDKLEEDIEQMESLATLMADKTAITQVPHALLRLKSIVYISLKIRSHLENENSRECDHQRVLCDLSI* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1585 969 Gene3D Ribonuclease Inhibitor 771 962 IPR032675 -
Amo19g1585 969 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 443 723 - -
Amo19g1585 969 Pfam TIR domain 8 139 IPR000157 GO:0007165
Amo19g1585 969 Pfam TIR domain 440 509 IPR000157 GO:0007165
Amo19g1585 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 744 IPR027417 -
Amo19g1585 969 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 443 723 IPR044974 GO:0006952
Amo19g1585 969 SMART till_3 7 138 IPR000157 GO:0007165
Amo19g1585 969 Gene3D - 680 725 IPR042197 -
Amo19g1585 969 Gene3D - 337 415 IPR042197 -
Amo19g1585 969 PRINTS Disease resistance protein signature 371 385 - -
Amo19g1585 969 PRINTS Disease resistance protein signature 277 291 - -
Amo19g1585 969 PRINTS Disease resistance protein signature 205 220 - -
Amo19g1585 969 PRINTS Disease resistance protein signature 887 903 - -
Amo19g1585 969 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 408 IPR044974 GO:0006952
Amo19g1585 969 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 725 944 IPR044974 GO:0006952
Amo19g1585 969 SUPERFAMILY L domain-like 728 945 - -
Amo19g1585 969 Gene3D - 171 324 IPR027417 -
Amo19g1585 969 Gene3D - 500 672 IPR027417 -
Amo19g1585 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 410 IPR027417 -
Amo19g1585 969 ProSiteProfiles TIR domain profile. 6 131 IPR000157 GO:0007165
Amo19g1585 969 Gene3D - 416 441 IPR035897 -
Amo19g1585 969 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 124 IPR035897 -
Amo19g1585 969 Coils Coil 903 923 - -
Amo19g1585 969 Gene3D - 1 170 IPR035897 -
Amo19g1585 969 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 18 408 - -
Amo19g1585 969 Pfam NB-ARC domain 525 723 IPR002182 GO:0043531
Amo19g1585 969 Pfam NB-ARC domain 186 410 IPR002182 GO:0043531
Amo19g1585 969 SMART AAA_5 202 324 IPR003593 -
Amo19g1585 969 SMART AAA_5 542 677 IPR003593 -
Amo19g1585 969 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 725 944 - -
Amo19g1585 969 CDD AAA 522 664 - -
Amo19g1585 969 SUPERFAMILY Toll/Interleukin receptor TIR domain 410 486 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1585 Amo-Chr19 37908084 37915682 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1585 723 883 WRKY Transcription Factor Family AT5G45050 24.891 6.03e-07 51.6