Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1570 ATGTCGTCGGAGCCGCTGATTCCGCCGTCCGACGACGCATTCTGGCGTTCTCACTCTTTCCGGCAATGCGGCGAACCGGCCACGTCGATTTTCGATGAATTGCCAAAAGCAACAAGCGTTTCGGTGTCGCGACCGGAGACCGGAGAAATTAGCCCAATCTTGCTTTCTTATACAATTGAGTTGGAGTACAAGCAGTTCAAGTGGCGTCTTCACAAGAGAGCAGCGCAAGTTCTCTACTTACAGTTTGCCCTGCGGAAACGTGTACTAATTGAACAACTTCATGACAAACAAGAGCAGATAAAAGAATGGCTTCAGAGCTTAGGAATAGTAGATCACACAGTGACGATACACGATGATGAAGAACCTGATGATGGAGCTGTGCCTTTACATCACGAAGACAGTGTTAAAAGCAGATATGTCCCATCTGTTGCTGCTCTATCAATAATTCGTCCATCATTAGGAGGGCAGCAATCGGTTGTAGACAGGGCAAAAGTCGCAATGCAAAGTTATTTGAATCTTTTCTTAGAAAACCTGGATATTGTTAATTCTCCAGAGGTCTGCAGGTTTTTGGAAGTCTCCAAGCTATCCTTTTTACATGAGTATGGTCCAAAGCTGAGAGAGGGATATGTGACAGTGAAGCATTTATCAAATGTTTCACAGGATTCAGAAGCATGCCATCCATGTGATTGGCTTCGTGGCTGTAATAACAGCTGGAAGAAGGTATGGGCTGTTTTGAAACATGGATTTTTGGCCTTGCTGGATGGCCCTTTCAGCAATATACCGCTGGACATACTTGTTTTTGATGTTCTTCCATCCTCAAAAGGAGATAAAACACAAATACATTTAGCTGATCCTGTAAAGGAATGTAATCCTTTGCGATACACATTTAAGGTTACTAGTGGGAATAGGACCATATCATTGAGAACTACCAGCAATGGTAGGGTTAAAGCTTGGGTAAATGCAATTAATGAAGCTGGTCTTCGACCTTCGGAGGGTTGGTGTCGTCCTCATCGGTTTGCTTCATTTGCTCCTGTAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAGTGGTTTGTAGACGGAAAGGCAGCATTTCAAGCAATTGCTTCTTCAATTCAAGCTGCAAAATCAGAGATCTTCATTACAGGATGGTGGCTTTGCCCCGAGCTATATCTTAAACGTCCTTTTGATGGCTTTTCAAAACTCAGACTTGACTCGTTGCTAGAAGAAAAAGCTATGCAAGGAGTTCAGATATATGTGCTTCTCTACAAGGAGGTTTCTCTGGCTTTGAAAATCAACAGCTCGTATAGTATGAGAAGACTCCTCAAAATTCATGAGAATGTGAGGGTATTGCGCTATCCTGACCATTTAACCAGTGGCGTGTATTTATGGTCGCACCATGAGAAACTTGTAATTGTTGATTACAAGATTTGCTATATTGGAGGATTAGACTTATGCTTCGGTCGATATGACACGCCTGACCATAAAGTTGGTGATTGCCCCTCTATTACATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCATGGGAAGACACGATGAGAGATGAATTGGATCGTGAGAAATATCCTCGTATGCCATGGCATGATGTCCATTGTGCCCTTTGGGGACCTCCTTGTCGTGATATTGCTCGACATTTCATTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAGCATGAAATCCCGCTACTTATGCCTCACCATCACATGGTCCTCCCTCATTACATGGGAAAAAGCAAAGATATGGACATTACTGGAAAGAAAGATGAAGATGGCACGAAAGAACTTGAGAGTAAGGATTCATTTTCGGAGTCTCCGGTACAAGATATACCGCTGCTTTTACCTCAAGAATCTGGTGGACTAATTACTTCGCTCGGAGATCATTCCAATATTAGTGAAAAGGTTCCATTATCATCCCAAAAGTTGGAAAATGAAACATCAACTCCAAACACAAAGATCAATGGGTTTCATGATGAAGTTGTTCCTTTTGACCTTGGTGCACAATCTGTTGTTTATGATCTAGACGATTGGTGGGAAACACCAGATGAAGGTACCAAACACGATAATAATTTGGAATATAGACAAGTTGGTCCACGTACTTCTTGTCGCTGTCAGGTAATCAGAAGTGTCGGCCAATGGTCAGCTGGAACCAGTCAGCATGAAGAAAGCATTCACACAGCATATTGTTCTCTTATTGAAAAAGCAAAGCATCTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAAAGGATGACACAATTCAGAACCGTGTACTGGAAGCACTATACAGGCGCATTTTACAAGCACACAAGGAACAGAATAAATTTAGAGTTATAGTTGTGATGCCCCTCTTGCCTGGGTTCCAAGGTGGTCTCGATGATGGTGGTGCTGCAACTGTCAGGGCTTTAACACATTGGCAGTATAGAACAATTTCAAGGGAAAAGCATTCTATATTACACAATCTTGAAGCTAAAATTGGTCCTAAGGCTCATGATTATATTTCTTTCTATGGTCTACGATCTCATGGTAGACTTCATGCCGATGGTTACGTGGCCACAAGTCAGGTATATGTGCATAGTAAATTGATGATAATAGATGACCGTGTAGCTGTCATCGGATCATCTAACATTAACGACCGTAGTCTGCTTGGGTTAAGAGACTCTGAGATAGGAGTGGTTATAGAAGACAAGGAATGTGTTGAATCATTGATGAATGGAAAACCATGGAAAGCTGGGAAATTTTCTTATAGCCTCCGTTGTTCCTTATGGTCTGAACACCTTGGCCTTCATACAGAAGAGGTCAGTAAAATTAGTGATCCATTGGCAGACACAACATACAAGGACTTGTGGTCAGCAACTGCGAAGGAAAATACTAGGATATATGATGAGGTCTTCGGTTGCATTCCGAATGATCAGATACACTCAAGATCTGCTCTTCGACAAAGCATGGCTCAGCGGAAAGAAAAGGTGGGCCACACCACCATAGATTTGGGAATAGCCCCTGATAAGTTAATAACTAGTGATGCCTATGGAGAAATCAATGAGACAAATTCAATGGATAGATTGAACTCTGTAAAGGGACATCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGATGAAGATCTAAGACCAGCCTTTATTGAGAGTGAGTTTTACGTAGCTCCTCAAGTATATCATTAG 3231 0.4222 MSSEPLIPPSDDAFWRSHSFRQCGEPATSIFDELPKATSVSVSRPETGEISPILLSYTIELEYKQFKWRLHKRAAQVLYLQFALRKRVLIEQLHDKQEQIKEWLQSLGIVDHTVTIHDDEEPDDGAVPLHHEDSVKSRYVPSVAALSIIRPSLGGQQSVVDRAKVAMQSYLNLFLENLDIVNSPEVCRFLEVSKLSFLHEYGPKLREGYVTVKHLSNVSQDSEACHPCDWLRGCNNSWKKVWAVLKHGFLALLDGPFSNIPLDILVFDVLPSSKGDKTQIHLADPVKECNPLRYTFKVTSGNRTISLRTTSNGRVKAWVNAINEAGLRPSEGWCRPHRFASFAPVRGLTEDGSQAQWFVDGKAAFQAIASSIQAAKSEIFITGWWLCPELYLKRPFDGFSKLRLDSLLEEKAMQGVQIYVLLYKEVSLALKINSSYSMRRLLKIHENVRVLRYPDHLTSGVYLWSHHEKLVIVDYKICYIGGLDLCFGRYDTPDHKVGDCPSITWPGKDYYNPRESEPNSWEDTMRDELDREKYPRMPWHDVHCALWGPPCRDIARHFIQRWNHAKRTKAPNEHEIPLLMPHHHMVLPHYMGKSKDMDITGKKDEDGTKELESKDSFSESPVQDIPLLLPQESGGLITSLGDHSNISEKVPLSSQKLENETSTPNTKINGFHDEVVPFDLGAQSVVYDLDDWWETPDEGTKHDNNLEYRQVGPRTSCRCQVIRSVGQWSAGTSQHEESIHTAYCSLIEKAKHLIYIENQFFISGLAKDDTIQNRVLEALYRRILQAHKEQNKFRVIVVMPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILHNLEAKIGPKAHDYISFYGLRSHGRLHADGYVATSQVYVHSKLMIIDDRVAVIGSSNINDRSLLGLRDSEIGVVIEDKECVESLMNGKPWKAGKFSYSLRCSLWSEHLGLHTEEVSKISDPLADTTYKDLWSATAKENTRIYDEVFGCIPNDQIHSRSALRQSMAQRKEKVGHTTIDLGIAPDKLITSDAYGEINETNSMDRLNSVKGHLVSFPLEFMRDEDLRPAFIESEFYVAPQVYH* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1570 1076 MobiDBLite consensus disorder prediction 594 617 - -
Amo19g1570 1076 MobiDBLite consensus disorder prediction 650 670 - -
Amo19g1570 1076 Gene3D Endonuclease Chain A 693 935 - -
Amo19g1570 1076 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 871 898 IPR001736 GO:0003824
Amo19g1570 1076 Pfam Phospholipase D Active site motif 462 489 IPR001736 GO:0003824
Amo19g1570 1076 CDD PLDc_vPLD1_2_yPLD_like_1 355 500 - -
Amo19g1570 1076 PIRSF PLD_euk 589 1076 IPR016555 GO:0004630|GO:0006654|GO:0048017
Amo19g1570 1076 PIRSF PLD_euk 18 601 IPR016555 GO:0004630|GO:0006654|GO:0048017
Amo19g1570 1076 SUPERFAMILY Phospholipase D/nuclease 311 582 - -
Amo19g1570 1076 PANTHER PHOSPHOLIPASE D 23 1073 IPR015679 -
Amo19g1570 1076 Gene3D Endonuclease Chain A 348 584 - -
Amo19g1570 1076 SMART pld_4 462 489 IPR001736 GO:0003824
Amo19g1570 1076 SMART pld_4 871 898 IPR001736 GO:0003824
Amo19g1570 1076 Gene3D - 206 330 IPR011993 -
Amo19g1570 1076 CDD PLDc_vPLD1_2_yPLD_like_2 731 915 - -
Amo19g1570 1076 SUPERFAMILY Phospholipase D/nuclease 709 921 - -
Amo19g1570 1076 MobiDBLite consensus disorder prediction 594 623 - -
Amo19g1570 1076 MobiDBLite consensus disorder prediction 650 669 - -
Amo19g1570 1076 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 462 489 IPR001736 GO:0003824
Amo19g1570 1076 ProSiteProfiles PH domain profile. 203 327 IPR001849 -
Amo19g1570 1076 SMART PH_update 204 329 IPR001849 -
Amo19g1570 1076 SUPERFAMILY PH domain-like 233 325 - -
Amo19g1570 1076 CDD PH_PLD 181 325 - -
Amo19g1570 1076 Pfam PLD-like domain 744 918 IPR025202 -
Amo19g1570 1076 PANTHER PHOSPHOLIPASE D ZETA 2 23 1073 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1570 Amo-Chr19 37245406 37255482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1570 30 1076 Phospholipase D Gene Family (Wang group) AT3G05630 65.722 0.0 1380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1570 K01115 - gmx:100796914 1768.05