Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1547 ATGGTAGAGTTGGCCAAGGCTCATGCAAAGGCTTTAATGCCATCATTTGGTGACGGTAAGGAAGAACAACGTGCTATCGAGTCCCTAACATACGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCAGAGACTTTCTGCTGGTGGGCCATCTGAGGATTCCAACGTGAGGAAGAATGTGCAGCGTTCTCTTGCTACCGACCTTCAGAACTTGTCTGTAGAGCTCCGCAAGAAACAATCAACATATTTGAAGCGCCTAAGGCAACAAAAGGAGGGTCCAGACGGGGTTGATTTAGAGATCAACATGAATGGAAGTAAATCCACATATGAAGATGATGACCTGGATAATATGATATTTAATGAACATCAAATGGCCAAGCTGAAGAAAACTGAAGCATTCACAGTGGAAAGAGAAAAAGAAATTCAGCAGGTTGTAGAATCTGTAAACGAGCTTGCTCAAATTATGAAGGATTTATCAGTCCTAGTCATTGACCAGGGTACGATTGTTGATAGAATAGACTACAACATTCAGAATGTAGCCACTACAGTTGAAGATGGCCTTAAACAGCTTCAGAAGGCAGAGAGAAACCAGAAAAAGGGGGGCATGGTGATGTGTGCGACGGTGCTGCTCATCATGTGCCTTGTTATGTTGGTTCTCTTAATCCTTAAGGAAATTATCTTGTGA 690 0.4246 MVELAKAHAKALMPSFGDGKEEQRAIESLTYEITDLIKRSEKRLQRLSAGGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGPDGVDLEINMNGSKSTYEDDDLDNMIFNEHQMAKLKKTEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERNQKKGGMVMCATVLLIMCLVMLVLLILKEIIL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1547 229 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 224 - -
Amo19g1547 229 Gene3D - 1 187 - -
Amo19g1547 229 CDD SNARE_syntaxin16 138 194 - -
Amo19g1547 229 Coils Coil 178 198 - -
Amo19g1547 229 Pfam SNARE domain 169 221 IPR000727 -
Amo19g1547 229 SUPERFAMILY t-snare proteins 3 188 IPR010989 GO:0016020|GO:0016192
Amo19g1547 229 SMART tSNARE_6 128 195 IPR000727 -
Amo19g1547 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Amo19g1547 229 ProSitePatterns Syntaxin / epimorphin family signature. 139 178 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo19g1547 229 PANTHER SYNTAXIN 1 224 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1547 Amo-Chr19 35250852 35255515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1547 1 218 SNARE and Associated Proteins AT3G05710 78.440 1.66e-125 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1547 K08489 - gmx:100789659 370.933