Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1545 AGCAATTCAGAATTTACTCAAATACCCCTACCTTCCATAGCAACCACTTTCCTCCCACTTCCCTCCATCAACCAGAGGTTGCCATCACTGGCCGCTCACGTAACTGTTGAACACGTCGCTTACCTCGCCAGGTCGCCCCTCCAGTCTCTAGCCTTTGCTCATCTCGCTGTCACTCACCTCTATGGGTGCATTCTTTACATGGAGGCTCTATCAATAGATTGCACAACTGATGTGAATAATGAGTTTGAGTGGTCTTCAGAGGATGAAATAGACGATGTTGAAGGGTTAGAGTACGGAGACATTTTGGGGTTGACTGCTGGAGACATAATGAGGATGGTTTTCCGCAGTGATGATGGAGCTTATGAGTTTTACAGGGTGTTTGGTAAATTTCACGGATTTGGCATTCGAAAGGGTGATTGTGGTAAGGATGATGACGGAAGGTTGATTAGGAGGAGGTTTTTCTGTAATAGGGCAAGATTGAGGGAGCATAAACACTACAACCGAGTTGATAGGTGGCGGGAGCACAAGCCTGAGACCCGCACAAATTGTGATGCAAAGTTATCAATTTACCTTGATATCAACATCAATGTTTGGAGGGTTAGGAAGGTGATATTGGAGCATAATCATGATCTGAAACCGACAAGA 645 0.4527 SNSEFTQIPLPSIATTFLPLPSINQRLPSLAAHVTVEHVAYLARSPLQSLAFAHLAVTHLYGCILYMEALSIDCTTDVNNEFEWSSEDEIDDVEGLEYGDILGLTAGDIMRMVFRSDDGAYEFYRVFGKFHGFGIRKGDCGKDDDGRLIRRRFFCNRARLREHKHYNRVDRWREHKPETRTNCDAKLSIYLDININVWRVRKVILEHNHDLKPTR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1545 215 Coils Coil 214 215 - -
Amo19g1545 215 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 108 212 - -
Amo19g1545 215 Pfam FAR1 DNA-binding domain 122 212 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1545 Amo-Chr19 35231725 35233765 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g1545 FAR1 1.8e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1545 - - aip:107636226 164.466